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Identifying Important Pairwise Logratios in Compositional Data with Sparse Principal Component Analysis

Viktorie Nesrstová; Ines Wilms; Karel Hron; Peter Filzmoser
Mathematical Geosciences · Vol. 57, Issue 2 · pp. 333-358 · 2025

Abstract

Compositional data are characterized by the fact that their elemental information is contained in simple pairwise logratios of the parts that constitute the composition. While pairwise logratios are typically easy to interpret, the number of possible pairs to consider quickly becomes too large even for medium-sized compositions, which may hinder interpretability in further multivariate analysis. Sparse methods can therefore be useful for identifying a few important pairwise logratios (and parts contained in them) from the total candidate set. To this end, we propose a procedure based on the construction of all possible pairwise logratios and employ sparse principal component analysis to identify important pairwise logratios. The performance of the procedure is demonstrated with both simulated and real-world data. In our empirical analysis, we propose three visual tools showing (i) the balance between sparsity and explained variability, (ii) the stability of the pairwise logratios, and (iii) the importance of the original compositional parts to aid practitioners in their model interpretation.

Bibliographic Information

JournalMathematical Geosciences
PublisherSpringer
Publication Date2025-02-01
Publication Year2025
Volume57
Issue2
Pages333-358
Document TypeJournal Article
Print ISSN1874-8961
eISSN1874-8953
DOI10.1007/s11004-024-10159-0

Access Information

NARA Access Coverage1969-01-01~Current
Journal Homepagehttps://www.springer.com/journal/11004
Publisher PageOpen Publisher Page
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