Abstract
The genetic structure of populations is often shaped by the reproductive system and larval properties of the species. The waratah anemone ( Actinia tenebrosa ) reproduces through both asexual clones, which have very short‐distance dispersal, and sexual larvae, which are believed to disperse much greater distances. The impact of this mixed strategy on the New Zealand population structure of Actinia tenebrosa was investigated using microsatellite markers. The analysis incorporated 24 sampling locations from around New Zealand and one Australian location, using four microsatellite markers, n = 420. We observed low connectivity and high genetic differentiation between all locations sampled, with a distinct pattern of isolation by distance. The most distinct grouping of locations sampled was the north‐east of the North Island from Cape Reinga to East Cape, which was identified by SAMOVA and STRUCTURE analyses as being moderately diverged from the remainder of the country. A tentative correlation was observed between genetic clustering and biogeographic regionalisation, where the distribution of a number of genetic clusters matched previously defined biogeographic regions. Within each location sampled, large numbers of clones were present and a latitudinal cline was observed in the relative contribution of asexually and sexually generated recruits, with an increase in asexual recruits on the South Island's east coast.