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Promoting FAIR Data Through Community-driven Agile Design: the Open Data Commons for Spinal Cord Injury (odc-sci.org)

Abel Torres-Espín; Carlos A. Almeida; Austin Chou; J. Russell Huie; Michael Chiu; Romana Vavrek; Jeff Sacramento; Michael B. Orr; John C. Gensel; Jeffery S. Grethe; Maryann E. Martone; Karim Fouad; Adam R. Ferguson; Warren Alilain; Mark Bacon; Nicholas Batty; Michael Beattie; Jacqueline Bresnahan; Emily Burnside; Sarah Busch; Randall Carpenter; Isaac Francos Quijorna; Xiaohui Guo; Agnes Haggerty; Sarah Haroon; Jack Harris; Lyn Jakeman; Linda Jones; Naomi Kleitman; Timothy Kopper; Michael Lane; Francisco Magana; David Magnuson; Ines Maldonado; Verena May; Katelyn McFarlane; Kazuhito Morioka; Martin Oudega; Philip Leo Pascual; Jean-Baptiste Poline; Ephron Rosenzweig; Emma Schmidt; Wolfram Tetzlaff; Lana Zholudeva
Neuroinformatics · Vol. 20, Issue 1 · pp. 203-219 · 2022

Abstract

The past decade has seen accelerating movement from data protectionism in publishing toward open data sharing to improve reproducibility and translation of biomedical research. Developing data sharing infrastructures to meet these new demands remains a challenge. One model for data sharing involves simply attaching data, irrespective of its type, to publisher websites or general use repositories. However, some argue this creates a ‘data dump’ that does not promote the goals of making data Findable, Accessible, Interoperable and Reusable (FAIR). Specialized data sharing communities offer an alternative model where data are curated by domain experts to make it both open and FAIR. We report on our experiences developing one such data-sharing ecosystem focusing on ‘long-tail’ preclinical data, the Open Data Commons for Spinal Cord Injury (odc-sci.org). ODC-SCI was developed with community-based agile design requirements directly pulled from a series of workshops with multiple stakeholders (researchers, consumers, non-profit funders, governmental agencies, journals, and industry members). ODC-SCI focuses on heterogeneous tabular data collected by preclinical researchers including bio-behaviour, histopathology findings and molecular endpoints. This has led to an example of a specialized neurocommons that is well-embraced by the community it aims to serve. In the present paper, we provide a review of the community-based design template and describe the adoption by the community including a high-level review of current data assets, publicly released datasets, and web analytics. Although odc-sci.org is in its late beta stage of development, it represents a successful example of a specialized data commons that may serve as a model for other fields.

Bibliographic Information

JournalNeuroinformatics
PublisherSpringer
Publication Date2022-01-01
Publication Year2022
Volume20
Issue1
Pages203-219
Document TypeJournal Article
eISSN1559-0089
DOI10.1007/s12021-021-09533-8

Access Information

NARA Access Coverage2003-01-01~Current
Journal Homepagehttps://www.springer.com/journal/12021
Publisher PageOpen Publisher Page
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