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Journal Article

Flexible and practical modeling of animal telemetry data: hidden Markov models and extensions

Roland Langrock; Ruth King; Jason Matthiopoulos; Len Thomas; Daniel Fortin; Juan M. Morales
Ecology · Vol. 93, Issue 11 · pp. 2336-2342 · 2012

Abstract

We discuss hidden Markov‐type models for fitting a variety of multistate random walks to wildlife movement data. Discrete‐time hidden Markov models (HMMs) achieve considerable computational gains by focusing on observations that are regularly spaced in time, and for which the measurement error is negligible. These conditions are often met, in particular for data related to terrestrial animals, so that a likelihood‐based HMM approach is feasible. We describe a number of extensions of HMMs for animal movement modeling, including more flexible state transition models and individual random effects (fitted in a non‐Bayesian framework). In particular we consider so‐called hidden semi‐Markov models, which may substantially improve the goodness of fit and provide important insights into the behavioral state switching dynamics. To showcase the expediency of these methods, we consider an application of a hierarchical hidden semi‐Markov model to multiple bison movement paths.

Bibliographic Information

JournalEcology
PublisherWiley
Publication Date2012-11-01
Publication Year2012
Volume93
Issue11
Pages2336-2342
Document TypeJournal Article
Print ISSN0012-9658
eISSN1939-9170
DOI10.1890/11-2241.1
SubjectEcology & Organismal Biology

Access Information

NARA Access Coverage1997-01-01~Current
Journal Homepagehttps://esajournals.onlinelibrary.wiley.com/loi/19399170
Publisher PageOpen Publisher Page
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