Abstract
Ecologists and evolutionary biologists perceive the ecological niche as a multidimensional relationship between an organism and its environment. Yet, we know little about the degree to which multiple niche axes evolve in concert across various spatial scales to explain differences in distribution patterns and habitat specialization among lineages. Here we used contemporary phylogenetic approaches to analyze the evolution of species' distributions across multiple spatial scales in Lasthenia , a young and ecologically diverse plant clade largely occurring within the California Floristic Province, USA. Lasthenia species and subspecies range from widely distributed taxa that occupy a diversity of habitat types to locally restricted habitat endemics, including several lineages that are strongly associated with isolated ephemeral wetlands called vernal pools. We quantified the niche of Lasthenia species and subspecies at three different spatial scales: the range‐wide climate niche, the habitat niche, and the within‐habitat depth niche for those taxa occupying vernal pools. We incorporated phylogenetic uncertainty into our analyses by reanalyzing previously described DNA sequences in a Bayesian context and conducting all subsequent comparative analyses over the resulting posterior distribution of ultrametric phylogenetic trees. Using a biogeographic approach for ancestral habitat reconstruction, we estimated that Lasthenia lineages have undergone up to four independent transitions from strictly terrestrial habitats to a niche that incorporates semiaquatic habitats, and one of these transitions led to the subsequent proliferation of vernal pool species and subspecies. We found that the local niche axis, corresponding to the depth distribution of taxa within pools, was more phylogenetically conserved than the large‐scale axes representing climatic associations. Furthermore, we did not find evidence that niche breadth estimates along different axes were consistently correlated, indicating that ecological specialization may be specific to certain niche axes rather than an overall characteristic of a species.