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Extending the Monod model of microbal growth with memory

Mohammad M. Amirian; Andrew J. Irwin; Zoe V. Finkel
Frontiers in Marine Science · Vol. 9 · 2022

Abstract

Monod’s model describes the growth of microorganisms using a hyperbolic function of extracellular resource concentration. Under fluctuating or limited resource concentrations this model performs poorly against experimental data, motivating the more complex Droop model with a time-varying internal storage pool. We extend the Monod model to incorporate memory of past conditions, adding a single parameter motivated by a fractional calculus analysis. We show how to interpret the memory element in a biological context and describe its connection to a resource storage pool. Under nitrogen starvation at non-equilibrium conditions, we validate the model with simulations and empirical data obtained from lab cultures of diatoms ( T. pseudonana and T. weissflogii ) and prasinophytes ( Micromonas sp. and O. tauri ), globally influential phytoplankton taxa. Using statistical analysis, we show that our Monod-memory model estimates the growth rate, cell density and resource concentration as well as the Droop model, while requiring one less state variable. Our simple model may improve descriptions of phytoplankton dynamics in complex earth system models at a lower computational cost than is presently achievable.

Bibliographic Information

JournalFrontiers in Marine Science
PublisherFrontiers
Publication Date2022-12-01
Publication Year2022
Volume9
Document TypeJournal Article
eISSN2296-7745
DOI10.3389/fmars.2022.963734
SubjectMarine science; fisheries; aquaculture; pollution; ocean observation; policy

Access Information

NARA Access CoverageOA / free full text
Journal Homepagehttps://www.frontiersin.org/journals/marine-science
Publisher PageOpen Publisher Page
This article is openly available from the publisher.