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Molecular characterization of Salmonella isolates from poultry in Egypt: Detection of virulence, ESBLs genes and antimicrobial resistance profiling

Mona Salem; Reem Ghabbour; Noura F. Mostafa; Amal Awad; Gamal Younis
Veterinary Research Communications · Vol. 50, Issue 1 · 2026

Abstract

This study aimed to determine the prevalence, serovars, virulence gene profiles, antimicrobial resistance patterns, and extended-spectrum β-lactamase (ESBL) genes in Salmonella isolated from broiler chickens in Egypt. In this study, 200 samples were obtained from broiler chickens. Samples were processed using standard bacteriological techniques, and suspected isolates were biochemically identified and molecularly confirmed by PCR targeting the inv A gene. Serotyping was performed according to the Kauffmann–White scheme. Virulence genes ( hil A, stn , spv C, and spi C) and ESBL genes ( bla TEM , bla SHV , and bla CTX −M ) were detected by PCR. Antimicrobial susceptibility testing was carried out following CLSI guidelines. Nineteen isolates (9.5%) were confirmed as Salmonella . Serotyping revealed four serovars: S . Kentucky (52.63%), S . Typhimurium (21.05%), S . Salamae (15.79%), and S . Infantis (10.53%). All isolates carried inv A and hil A, while stn and spi C were present in 84.21% and 73.68% of isolates, respectively, spv C was detected in only one isolate (5.26%). All isolates were resistant to ceftazidime, cefepime, and erythromycin. High resistance rates were also observed against amoxicillin, amoxicillin-clavulanic acid, ciprofloxacin, and doxycycline. Detection of ESBL genes revealed that bla TEM was present in 16 isolates (84.2%), bla CTX−M in 6 isolates (31.6%), and bla SHV in 2 isolates (10.5%). Statistical analyses (Chi-square and Spearman’s correlation tests) further confirmed significant associations between ESBL genes and both phenotypic resistance and virulence determinants, strengthening the validity of our findings. The high prevalence of virulence factors and antimicrobial resistance traits, particularly extensively drug-resistant (XDR) phenotypes and ESBL-encoding genes among Salmonella isolates from poultry, represents a critical public health concern. These findings emphasize the need for continuous molecular surveillance, improved antimicrobial stewardship, and enhanced biosecurity strategies in poultry production in Egypt.

Bibliographic Information

JournalVeterinary Research Communications
PublisherSpringer
Publication Date2026-02-01
Publication Year2026
Volume50
Issue1
Document TypeJournal Article
Print ISSN0165-7380
eISSN1573-7446
DOI10.1007/s11259-025-10936-0

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NARA Access Coverage1977-01-01~Current
Journal Homepagehttps://www.springer.com/journal/11259
Publisher PageOpen Publisher Page
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