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Enumeration of organisms occurring in the intestinal tract and yolk sac of day-old chicks from commercial hatcheries

Karely Cantu; Craig Coufal; Michael Rothrock; Steven C. Ricke
Veterinary Research Communications · Vol. 50, Issue 5 · 2026

Abstract

This study evaluated the naturally occurring microorganisms within the gastrointestinal tract (GIT) and yolk sacs of day-old commercial broiler chicks. Across 6 independent trials, day-old chicks ( n = 10 per trial) were obtained from various commercial hatcheries, humanely euthanized, and necropsied. The entire intestine (duodenum to colon) and the yolk sac were isolated, homogenized, serially diluted, and plated onto selective media to enumerate total aerobes, Clostridium spp., Clostridium perfringens , Staphylococcus aureus , Gram-negative bacteria, Escherichia coli , total coliforms, and yeast and molds. Intestinal microbial loads were consistently high, with counts for both total aerobes and Clostridium spp. (8.14 and 8.11 log 10 cfu/mL, respectively). High counts for intestinal S. aureus , Gram-negative bacteria, E. coli , and total coliforms were also observed (6.57, 7.44, 6.57, and 7.60 log 10 cfu/mL, respectively). Intestinal yeast and mold counts averaged 5.49 log 10 cfu/mL. Intestinal C. perfringens counts were uniformly low, averaging 2.06 log 10 cfu/mL across all trials. In comparison, yolk sac microbial counts were lower, averaging 3.70, 3.67, and 1.52 log 10 cfu/mL for total aerobes, Clostridium spp., and C. perfringens , respectively. These results demonstrate that commercial broiler chicks harbor dense aerobic and anaerobic intestinal populations immediately upon hatch, whereas the yolk sac maintains substantially lower microbial loads. The discrepancy suggests that colonization occurs via trans-shell migration of eggshell microorganisms during incubation. Conversely, the high intestinal microbial loads appear to be primarily driven by the ingestion of environmental microorganisms circulating within the commercial hatchery environment at the time of hatch.

Bibliographic Information

JournalVeterinary Research Communications
PublisherSpringer
Publication Date2026-10-01
Publication Year2026
Volume50
Issue5
Document TypeJournal Article
Print ISSN0165-7380
eISSN1573-7446
DOI10.1007/s11259-026-11447-2

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NARA Access Coverage1977-01-01~Current
Journal Homepagehttps://www.springer.com/journal/11259
Publisher PageOpen Publisher Page
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