Integrative COI Barcoding and Species Delimitation in Echinodermata from Vietnam

Abstract

Echinoderms are marine invertebrates that play important roles in structuring marine benthic ecosystems. DNA barcoding has become a valuable tool for species identification; however, reference DNA barcode libraries for echinoderms remain incomplete. This study aims to: (i) develop a COI-5′ reference dataset for echinoderms from Vietnam by integrating DNA barcodes with morphological data; (ii) evaluate species resolution and barcode gaps using multiple analytical approaches; (iii) assess the consistency of species assignments from BOLD and GenBank for echinoderms collected in Vietnam; (iv) make barcode data publicly available to support global reference database development. Thirty-two echinoderm specimens representing 16 species were analyzed for COI-5′ sequences, and BLAST assignments were highly concordant with those from GenBank and BOLD. Integrative validation confirmed that all taxa were monophyletic in the Neighbor Joining Tree, formed single OTUs in Cluster Sequences, and exhibited clear barcode gaps greater than 3% to the nearest-neighbor species. These results provided species-level resolution for 75% and genus-level resolution for 90% of the records. The dataset, spanning four classes, eight orders, and eleven families, enhances barcode coverage and contributes records (ProcessIDs. BINs; GenBank accessions) to public repositories. This study delivers the first curated COI-5′ reference library, supporting regional baselines for taxonomy, conservation, and biodiversity assessment.

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