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Journal Article

Capturing complex interactions in disease ecology with simplicial sets

Matthew J. Silk; Mark Q. Wilber; Nina H. Fefferman
Ecology Letters · Vol. 25, Issue 10 · pp. 2217-2231 · 2022

Abstract

Network approaches have revolutionized the study of ecological interactions. Social, movement and ecological networks have all been integral to studying infectious disease ecology. However, conventional (dyadic) network approaches are limited in their ability to capture higher‐order interactions. We present simplicial sets as a tool that addresses this limitation. First, we explain what simplicial sets are. Second, we explain why their use would be beneficial in different subject areas. Third, we detail where these areas are: social, transmission, movement/spatial and ecological networks and when using them would help most in each context. To demonstrate their application, we develop a novel approach to identify how pathogens persist within a host population. Fourth, we provide an overview of how to use simplicial sets, highlighting specific metrics, generative models and software. Finally, we synthesize key research questions simplicial sets will help us answer and draw attention to methodological developments that will facilitate this.

Bibliographic Information

JournalEcology Letters
PublisherWiley
Publication Date2022-10-01
Publication Year2022
Volume25
Issue10
Pages2217-2231
Document TypeJournal Article
Print ISSN1461-023X
eISSN1461-0248
DOI10.1111/ele.14079
SubjectEcology & Organismal Biology

Access Information

NARA Access Coverage1998-01-01~Current
Journal Homepagehttps://onlinelibrary.wiley.com/loi/14610248
Publisher PageOpen Publisher Page
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