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Discrimination and taxonomy of geographically diverse strains of nitrile‐metabolizing actinomycetes using chemometric and molecular sequencing techniques

Pedro F. B. Brandão; Justin P. Clapp; Alan T. Bull
Environmental Microbiology · Vol. 4, Issue 5 · pp. 262-276 · 2002

Abstract

Summary Mycolic acid‐containing actinomycetes capable of metabolizing nitriles were recovered from deepsea sediments and terrestrial soils by enrichment culture on acetonitrile, benzonitrile, succinonitrile or bromoxynil. A total of 43 nitrile‐degrading strains were isolated and, together with previously reco‐vered nitrile‐degrading rhodococci, were identified by a polyphasic taxonomic approach, which included mycolic acid profiles, pyrolysis mass spectrometry (PyMS), genomic fingerprinting based on sequence variability of the 16S ribosomal RNA gene using polymerase chain reaction‐restriction fragment length polymorphism‐single‐strand conformational polymorphism, and 16S rRNA gene sequence comparison. Isolates phylogenetically related to Rhodococcus erythropolis dominated the culturable microorganisms from most marine and terrestrial samples. These isolates clustered together in a major pyrogroup that showed high congruence with PRS profiles of the 16S rRNA gene. Such high congruence also was obtained for other recovered isolates that were assigned to species of Rhodococcus and Gordonia . Sequencing data validated the results obtained by PRS analysis and enabled phylogenetic relationships to be established. Some of the recovered bacteria probably represent novel microbial species. The fact that nitrile‐metabolizing microorganisms were recovered from a wide range of habitat types suggests that nitrile transforming enzymatic activity is geographically widely distributed in nature.

Bibliographic Information

JournalEnvironmental Microbiology
PublisherWiley
Publication Date2002-05-01
Publication Year2002
Volume4
Issue5
Pages262-276
Document TypeJournal Article
Print ISSN1462-2912
eISSN1462-2920
DOI10.1046/j.1462-2920.2002.00292.x
SubjectMicrobial Ecology

Access Information

NARA Access Coverage1999-01-01~Current
Journal Homepagehttps://onlinelibrary.wiley.com/loi/14622920
Publisher PageOpen Publisher Page
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