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Vertical stratification of subsurface microbial community composition across geological formations at the Hanford Site

Xueju Lin; David Kennedy; Jim Fredrickson; Bruce Bjornstad; Allan Konopka
Environmental Microbiology · Vol. 14, Issue 2 · pp. 414-425 · 2012

Abstract

Summary Microbial diversity in subsurface sediments at the Hanford Site 300 Area near Richland, Washington state (USA) was investigated by analysing 21 samples recovered from depths of 9–52 m. Approximately 8000 near full‐length 16S rRNA gene sequences were analysed across geological strata that include a natural redox transition zone. These strata included the oxic coarse‐grained Hanford formation, fine‐grained oxic and anoxic Ringold Formation sediments, and the weathered basalt group. We detected 1233 and 120 unique bacterial and archaeal OTUs (operational taxonomic units at the 97% identity level) respectively. Microbial community structure and richness varied substantially across the different geological strata. Bacterial OTU richness (Chao1 estimator) was highest (> 700) in the upper Hanford formation, and declined to about 120 at the bottom of the Hanford formation. Just above the Ringold oxic–anoxic interface, richness was about 325 and declined to less than 50 in the deeper reduced zones. The deeper Ringold strata were characterized by a preponderance ( c . 90%) of Proteobacteria . The bacterial community in the oxic sediments contained not only members of nine well‐recognized phyla but also an unusually high proportion of three candidate divisions (GAL15, NC10 and SPAM). Additionally, 13 novel phylogenetic orders were identified within the Deltaproteobacteria , a clade rich in microbes that carry out redox transformations of metals that are important contaminants on the Hanford Site.

Bibliographic Information

JournalEnvironmental Microbiology
PublisherWiley
Publication Date2012-02-01
Publication Year2012
Volume14
Issue2
Pages414-425
Document TypeJournal Article
Print ISSN1462-2912
eISSN1462-2920
DOI10.1111/j.1462-2920.2011.02659.x
SubjectMicrobial Ecology

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NARA Access Coverage1999-01-01~Current
Journal Homepagehttps://onlinelibrary.wiley.com/loi/14622920
Publisher PageOpen Publisher Page
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