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Journal Article

Freshwater bacterial lifestyles inferred from comparative genomics

Joshua A. Livermore; Scott J. Emrich; John Tan; Stuart E. Jones
Environmental Microbiology · Vol. 16, Issue 3 · pp. 746-758 · 2014

Abstract

Summary While micro‐organisms actively mediate and participate in freshwater ecosystem services, we know little about freshwater microbial genetic diversity. Genome sequences are available for many bacteria from the human microbiome and the ocean (over 800 and 200, respectively), but only two freshwater genomes are currently available: the streamlined genomes of Polynucleobacter necessarius ssp . asymbioticus and the Actinobacterium AcI ‐ B 1. Here, we sequenced and analysed draft genomes of eight phylogentically diverse freshwater bacteria exhibiting a range of lifestyle characteristics. Comparative genomics of these bacteria reveals putative freshwater bacterial lifestyles based on differences in predicted growth rate, capability to respond to environmental stimuli and diversity of useable carbon substrates. Our conceptual model based on these genomic characteristics provides a foundation on which further ecophysiological and genomic studies can be built. In addition, these genomes greatly expand the diversity of existing genomic context for future studies on the ecology and genetics of freshwater bacteria.

Bibliographic Information

JournalEnvironmental Microbiology
PublisherWiley
Publication Date2014-03-01
Publication Year2014
Volume16
Issue3
Pages746-758
Document TypeJournal Article
Print ISSN1462-2912
eISSN1462-2920
DOI10.1111/1462-2920.12199
SubjectMicrobial Ecology

Access Information

NARA Access Coverage1999-01-01~Current
Journal Homepagehttps://onlinelibrary.wiley.com/loi/14622920
Publisher PageOpen Publisher Page
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