Abstract
Aim The symbioses between corals and endosymbiotic dinoflagellates have been described as a flexible relationship whose dynamics could serve as a source of resilience for coral reef ecosystems. However, the factors that drive the establishment and maintenance of this co‐evolutionary relationship remain unclear. We examined the environmental and geographical factors structuring dinoflagellate communities in a wide‐ranging Indo‐Pacific coral to begin to address this gap. Location Djibouti, Oman, Taiwan and French Polynesia. Taxon Cauliflower corals ( Pocillopora spp.), dinoflagellates (family Symbiodiniaceae). Methods We analysed publicly available amplicon sequence data from the nuclear ribosomal DNA internal transcribed spacer 2, originating from Pocillopora spp. We also compiled environmental data such as sea surface temperature (SST) and time since the last local mass bleaching event. We ran generalized least squares models, PERMANOVAs and indicator species analyses, to understand how thermal regimes and geographical distances impacted Pocillopora spp.'s Symbiodiniaceae community composition. Results Sea surface temperature was the most important factor driving Symbiodiniaceae community differences, with the largest effect size of the statistically significant factors. When focusing on individual Symbiodiniaceae genera, SST was likewise the most important factor. Our indicator species analyses revealed that specimens that had recently bleached were characterized by roughly equal proportions of Cladocopium spp. and Durusdinium spp., while specimens that had not recently bleached had a similar proportion of Durusdinium spp. as those that had recently bleached, but also showed a reduction in Cladocopium spp., with this deficiency made up by the presence of Symbiodinium spp. Main Conclusions We provide further support for the hypothesis that coral's Symbiodiniaceae communities could facilitate host resilience to thermal stress. Our work is in direct conversation with a larger body of biogeography literature that highlights how local environmental regimes can impact contemporary population structure, even in marine taxa with widespread distributions.