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Journal Article

Plant breeding selection tools built on factor analytic mixed models for multi-environment trial data

Alison B. Smith; Brian R. Cullis
Euphytica · Vol. 214, Issue 8 · 2018

Abstract

An advanced and widely used method of analysis for multi-environment trial data involves a linear mixed model with factor analytic (FA) variance structures for the variety by environment effects. This model can accommodate unbalanced data, that is, not all varieties in all environments, it allows the use of pedigree information and appropriate accommodation of individual trial experimental designs, and most importantly the FA structure for the variety by environment effects is parsimonious and regularly results in a good fit to the data. The model provides accurate predictions of the variety effects for every environment in the data-set but this constitutes a large and unwieldly amount of information to process for the purpose of variety selection. We address this issue in the current paper by proposing factor analytic selection tools to summarise the predictions in a concise yet informative manner. The tools, which are natural derivatives of the FA structure, result in measures of overall performance and stability across the environments in the data-set. All measures are expressed on the same scale as the trait under consideration and can easily be combined to form an index for selection.

Bibliographic Information

JournalEuphytica
PublisherSpringer
Publication Date2018-08-01
Publication Year2018
Volume214
Issue8
Document TypeJournal Article
Print ISSN0014-2336
eISSN1573-5060
DOI10.1007/s10681-018-2220-5

Access Information

NARA Access Coverage1952-01-01~Current
Journal Homepagehttps://www.springer.com/journal/10681
Publisher PageOpen Publisher Page
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