NARA Discovery
Article Details
← Back to Search Results
Journal Article

Phylogenetic characterization of Polish isolates of infectious pancreatic necrosis virus in salmonid fish

Joanna Maj‐Paluch; Marek Matras; Ewa Borzym; Magdalena Stachnik; Michal Reichert
Journal of Fish Diseases · Vol. 43, Issue 11 · pp. 1443-1451 · 2020

Abstract

Introduction Infectious pancreatic necrosis virus belongs to the genus Aquabirnavirus and family Birnaviridae . By VP2 gene similarity, aquatic birnavirus is clustered into seven genogroups. The aim of this study was to genetically analyse IPN viruses occurring on Polish fish farms. Materials and Methods Samples from freshwater fish mostly from 2012 to 2013 and from northern Poland were examined for the presence of IPN virus using isolation on cell cultures, real‐time RT‐PCR and RT‐PCR. Fragments of 1,377 and 1,079 bp of the VP2 and VP5 genes, respectively, were sequenced, and the results were assembled into one consensus and analysed by Geneious software. The same VP2 gene region was compared and a phylogenetic tree generated by the neighbour‐joining method and MEGA6 software. Results All tested Polish isolates belonged to genogroup 5, like other European Spajurup isolates. Conclusion Our findings prove that there is only one IPN virus genogroup in Poland. Polish isolates show close relationships with each other. There is a close relationship between Polish isolates and isolates from Turkey, Spain and Iran. Isolate 57 is a separate branch related to isolates from the United States and Taiwan. This points to the likelihood of past virus introduction via import of stock from those countries.

Bibliographic Information

JournalJournal of Fish Diseases
PublisherWiley
Publication Date2020-11-01
Publication Year2020
Volume43
Issue11
Pages1443-1451
Document TypeJournal Article
Print ISSN0140-7775
eISSN1365-2761
DOI10.1111/jfd.13249
SubjectGeneral Aquaculture, Fisheries & Fish Science

Access Information

NARA Access Coverage1997-01-01~Current
Journal Homepagehttps://onlinelibrary.wiley.com/loi/13652761
Publisher PageOpen Publisher Page
Full-text access depends on NARA's subscribed coverage and institutional access.