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Journal Article

MicroBayesAge: a maximum likelihood approach to predict epigenetic age using microarray data

Nicole Nolan; Megan Mitchell; Lajoyce Mboning; Louis-S. Bouchard; Matteo Pellegrini
GeroScience · Vol. 48, Issue 1 · pp. 691-704 · 2025

Abstract

Certain epigenetic modifications, such as the methylation of CpG sites, can serve as biomarkers for chronological age. Previously, we introduced the BayesAge frameworks for accurate age prediction through the use of locally weighted scatterplot smoothing (LOWESS) to capture the nonlinear relationship between methylation or gene expression and age, and maximum likelihood estimation (MLE) for bulk bisulfite and RNA sequencing data. Here, we introduce MicroBayesAge, a maximum likelihood framework for age prediction using DNA microarray data that provides less biased age predictions compared to commonly used linear methods. Furthermore, MicroBayesAge enhances prediction accuracy relative to previous versions of BayesAge by subdividing input data into age-specific cohorts and employing a new two-stage process for training and testing. Additionally, we explored the performance of our model for sex-specific age prediction which revealed slight improvements in accuracy for male patients, while no changes were observed for female patients.

Bibliographic Information

JournalGeroScience
PublisherSpringer
Publication Date2025-05-31
Publication Year2025
Volume48
Issue1
Pages691-704
Document TypeJournal Article
eISSN2509-2723
DOI10.1007/s11357-025-01716-4

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NARA Access Coverage1978-01-01~Current
Journal Homepagehttps://www.springer.com/journal/11357
Publisher PageOpen Publisher Page
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