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Journal Article

Big data in contemporary electron microscopy: challenges and opportunities in data transfer, compute and management

David Poger; Lisa Yen; Filip Braet
Histochemistry and Cell Biology · Vol. 160, Issue 3 · pp. 169-192 · 2023

Abstract

The second decade of the twenty-first century witnessed a new challenge in the handling of microscopy data. Big data, data deluge, large data, data compliance, data analytics, data integrity, data interoperability, data retention and data lifecycle are terms that have introduced themselves to the electron microscopy sciences. This is largely attributed to the booming development of new microscopy hardware tools. As a result, large digital image files with an average size of one terabyte within one single acquisition session is not uncommon nowadays, especially in the field of cryogenic electron microscopy. This brings along numerous challenges in data transfer, compute and management. In this review, we will discuss in detail the current state of international knowledge on big data in contemporary electron microscopy and how big data can be transferred, computed and managed efficiently and sustainably. Workflows, solutions, approaches and suggestions will be provided, with the example of the latest experiences in Australia. Finally, important principles such as data integrity, data lifetime and the FAIR and CARE principles will be considered.

Bibliographic Information

JournalHistochemistry and Cell Biology
PublisherSpringer
Publication Date2023-09-01
Publication Year2023
Volume160
Issue3
Pages169-192
Document TypeJournal Article
eISSN1432-119X
DOI10.1007/s00418-023-02191-8

Access Information

NARA Access Coverage1958-01-01~Current
Journal Homepagehttps://www.springer.com/journal/418
Publisher PageOpen Publisher Page
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