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Chloroplast genome of the invasive Pyrus calleryana underscores the high molecular diversity of the species

Marcin Nowicki; Matthew L. Huff; Margaret E. Staton; Robert N. Trigiano
Journal of Applied Genetics · Vol. 63, Issue 3 · pp. 463-467 · 2022

Abstract

The complete chloroplast genome of Pyrus calleryana (GenBank OM541581.1) was developed by de novo assembly from whole-genome sequencing data. Reference-guided ( P. phaeocarpa ) read mapping and assembly were followed by annotation and phylogenetic comparisons. The 159,965 bp P. calleryana chloroplast genome represented 36.56% GC content with a classical quadripartite architecture and two inverted repeats regions (IRs; each 26,392 bp) separating the large single-copy region (LSC; 87,942 bp) and the small single-copy region (SSC; 19.239 bp). In total, 125 unique features were annotated in that genome, including 83 protein coding genes, 38 tRNA coding genes, and 4 rRNA coding genes. Phylogenetic analyses based on the whole chloroplast genome sequences placed the P. calleryana among other Rosaceae plants, specifically among the Asian species of Pyrus .

Bibliographic Information

JournalJournal of Applied Genetics
PublisherSpringer
Publication Date2022-09-01
Publication Year2022
Volume63
Issue3
Pages463-467
Document TypeJournal Article
Print ISSN1234-1983
eISSN2190-3883
DOI10.1007/s13353-022-00699-8

Access Information

NARA Access Coverage2006-01-01~Current
Journal Homepagehttps://www.springer.com/journal/13353
Publisher PageOpen Publisher Page
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