Abstract
As agricultural land use and climate change continue to pose increasing threats to biodiversity in sub‐Saharan Africa, efforts are being made to identify areas where trade‐offs between future agricultural development and terrestrial biodiversity conservation are expected to be greatest. However, little research so far has focused on freshwater biodiversity conservation in the context of agricultural development in sub‐Saharan Africa. We aimed to identify lakes and lake areas where freshwater biodiversity is most likely to be affected by eutrophication and Harmful Algal Blooms (i.e., when algae multiply to the extent that they have toxic effects on people and freshwater fauna), some of the most important emerging threats to freshwater ecosystems worldwide, especially with the onset of climate change. Using novel remote‐sensing techniques, we identified lakes that demonstrated high biodiversity and algal bloom levels. We calculated the richness of freshwater species and the normalized difference chlorophyll index (NDCI) to prioritize lakes in Ghana, Ethiopia, Zambia, and bordering countries, of high priority for conservation. We identified 169 priority lakes and lake areas for conservation, based on high levels of biodiversity exposed to potentially harmful algal blooms. Zambia had the most lakes identified as conservation priorities (76% of its small lakes and five 100‐km 2 areas in large lakes). Many of the conservation priority lakes and lake areas identified in this study were in transboundary watersheds; thus, collaborative water resource management and conservation at the watershed scale is needed. The use of remote‐sensing tools to prioritize freshwater systems for conservation according to algal‐bloom risk is vital in remote, undersampled world regions, especially given the increasing threat posed to freshwater biodiversity by rapidly expanding agriculture and climate change.