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Background and aims Soil water deficits develop at some point during many cropping seasons. To enhance crop drought resilience, cropping characteristics to conserve soil water have often proved desirable. In this paper, two case studies are presented that documented from discovery through to field evaluation the characteristic of initiation of decrease in transpiration rate at comparatively high soil water contents for drought...
Ecosystem engineering by primary consumers increases long-term benthic primary production in Lake Mývatn, IcelandNARA Subscribed
Ecosystem engineers impact ecosystems by changing the physical environment in which species interact. In Lake Mývatn, Iceland, larvae of the midge Tanytarsus gracilentus function as ecosystem engineers by building tubes in the sediment that solidify the benthic surface and create a 3-dimensional structure on which microalgae can grow. To assess the ecosystem-scale effect of midge engineering, we took advantage of the natural h...
Interpretable deep learning reveals spatiotemporal MRI features of brain aging that align with neurodegenerationNARA Subscribed
Cortical thinning and atrophy are hallmarks of brain aging that have been characterized using magnetic resonance imaging (MRI). Brain aging involves many neuroanatomic features whose effects on brain structure remain unexplored. To address this challenge, we trained interpretable deep neural networks (DNNs) to estimate brain age (BA) from T 1 -weighted ( T 1 w) MRI. By identifying MRI features unapparent to humans, DNNs can fi...
Alzheimer’s disease (AD) disproportionately affects women and carriers of the apolipoprotein E ε4 allele (APOE4), yet little is known about how sex and APOE interact to influence white matter (WM) integrity during disease progression. We integrated diffusion MRI and matched blood transcriptomic data to investigate these interactions and their underlying biological mechanisms. WM microstructure was quantified using diffusion te...
Genetic variation that impacts gene regulation, rather than protein function, can have strong effects on trait variation both within and between species. Epigenetic mechanisms, such as DNA methylation, are often an important intermediate link between genotype and phenotype, yet genetic effects on DNA methylation remain understudied in natural populations. To address this gap, we used reduced representation bisulfite sequencing...
Predicting the progression of MCI and Alzheimer’s disease on structural brain integrity and other features with machine learningNARA Subscribed
Machine learning (ML) on structural MRI data shows high potential for classifying Alzheimer’s disease (AD) progression, but the specific contribution of brain regions, demographics, and proteinopathy remains unclear. Using Alzheimer’s Disease Neuroimaging Initiative (ADNI) data, we applied an extreme gradient-boosting algorithm and SHAP (SHapley Additive exPlanations) values to classify cognitively normal (CN) older adults, th...
While climate warming is widely predicted to reduce body size of ectotherms, evidence for this trend is mixed. Body size depends not only on temperature but also on other factors, such as food quality and intraspecific competition. Because temperature trends or other long‐term environmental factors may affect population size and food sources, attributing trends in average body size to temperature requires the separation of pot...
Evolving immunogenicity assay performance expectations and a lack of harmonized neutralizing antibody validation testing and reporting tools have resulted in significant time spent by health authorities and sponsors on resolving filing queries. A team of experts within the American Association of Pharmaceutical Scientists’ Therapeutic Product Immunogenicity Community across industry and the Food and Drug Administration address...
Reconstructing midge consumer–resource dynamics using carbon stable isotope signatures of archived specimensNARA Subscribed
Population cycles can be caused by consumer–resource interactions. Confirming the role of consumer–resource interactions, however, can be challenging due to an absence of data for the resource candidate. For example, interactions between midge larvae and benthic algae likely govern the high‐amplitude population fluctuations of Tanytarsus gracilentus in Lake Mývatn, Iceland, but there are no records of benthic resources concurr...