Substantial domestication associated divergence of farmed from wild Atlantic salmon has raised concerns regarding the negative impacts of farm escapees on the genetic integrity and adaptability of wild salmon populations. Studies from across the North Atlantic have repeatedly demonstrated the presence of hybridization and introgression from escapees into wild salmon populations, however longer-term genetic monitoring has rarel...

The rapid, range-wide decline in Atlantic salmon, Salmo salar , populations is well documented and has led to establishment of captive rearing and breeding programs in order to preserve populations. However, recovery potential may be limited by the inclusion of non-local genotypes, which can be both difficult to detect and quantify. In the genetically unique Inner Bay of Fundy population located in Canada, three Live Gene Bank...

Aim In northern environments, periods of isolation during Pleistocene glaciations and subsequent recolonization and secondary contact have had a significant influence on contemporary diversity of many species. The recent advent of high‐resolution genomic analyses allows unprecedented power to resolve genomic signatures of such events in northern species. Here, we provide the highest resolution genomic characterization of Atlan...

Estimating egg deposition for Atlantic salmon population assessments is made difficult by their lack of sexual dimorphism prior to the autumn spawning season. We quantified the effect of sex misclassification from subjective examination of external morphology on egg deposition estimates in four Atlantic salmon populations across multiple years. Sex classification of Canadian salmon using the genetic sex marker ( sd Y) was accu...

The post‐glacial colonization of Gander Lake in Newfoundland, Canada, by Arctic Charr ( Salvelinus alpinus) provides the opportunity to study the genomic basis of adaptation to extreme deep‐water environments. Colonization of deep‐water (>50 m) habitats often requires extensive adaptation to cope with novel environmental challenges from high hydrostatic pressure, low temperature, and low light, but the genomic mechanisms under...