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Assessing species richness (i.e., the number of species in a specific area) is of significant ecological relevance across theoretical, empirical, and practical applications. Accurately estimating species richness remains a persistent statistical challenge, as direct species counts are often unreliable. Consequently, numerous species richness estimation methods have been developed to accommodate a wide range of data types, rese...
Interpretable deep learning reveals spatiotemporal MRI features of brain aging that align with neurodegenerationNARA Subscribed
Cortical thinning and atrophy are hallmarks of brain aging that have been characterized using magnetic resonance imaging (MRI). Brain aging involves many neuroanatomic features whose effects on brain structure remain unexplored. To address this challenge, we trained interpretable deep neural networks (DNNs) to estimate brain age (BA) from T 1 -weighted ( T 1 w) MRI. By identifying MRI features unapparent to humans, DNNs can fi...
SNAPSHOT USA 2024: Year 6 of the Coordinated National Camera Trap Survey of the United StatesNARA Subscribed
Motivation SNAPSHOT USA is an annual, multi‐contributor camera trap survey of mammals across the United States. The growing SNAPSHOT USA dataset is intended for tracking the spatial and temporal responses of mammal populations to changes in land use, land cover and climate. These data will be useful for exploring the drivers of spatial and temporal changes in relative abundance and distribution, as well as the impacts of speci...
Alzheimer’s disease (AD) disproportionately affects women and carriers of the apolipoprotein E ε4 allele (APOE4), yet little is known about how sex and APOE interact to influence white matter (WM) integrity during disease progression. We integrated diffusion MRI and matched blood transcriptomic data to investigate these interactions and their underlying biological mechanisms. WM microstructure was quantified using diffusion te...
Changing fire regimes have important implications for biodiversity and challenge traditional conservation approaches that rely on historical conditions as proxies for ecological integrity. This historical‐centric approach becomes increasingly tenuous under climate change, necessitating direct tests of environmental impacts on biodiversity. At the same time, widespread departures from historical fire regimes have limited the ab...
Mapping Oak (Quercus spp.) Regeneration Potential Within the Nantahala National ForestNARA Subscribed
Forest mesophication threatens the regeneration and potential future perpetuation of oak ( Quercus spp.) forests throughout southern Appalachia and eastern United States (US). We explored methods to produce stand-scale oak site suitability maps, within the Nantahala National Forest in North Carolina, which can be used to prioritize site-specific treatments to allow for oak regeneration and recruitment using silvicultural strat...
Extreme Weather Magnifies the Effects of Forest Structure on Wildfire, Driving Increased Severity in Industrial ForestsNARA Subscribed
Despite widespread concern over increases in wildfire severity, the mechanisms underlying this trend remain unclear, hampering our ability to mitigate the severity of future fires. There is substantial uncertainty regarding the relative roles of extreme weather conditions, which are exacerbated by climate change, and forest management, in particular differences between private industrial timber companies and public land agenci...
Nonnative Species Richness and Dominance Reveal Differing Support for Invasion Theory at a Continental ExtentNARA Subscribed
Aim Empirical tests of conceptual hypotheses describing species invasions often differ depending on the spatial scale (spatial resolution and extent of study area) at which they were conducted. Some of this disparity may arise from tradeoffs in data quality necessitating the use of different indices of community invadedness among scales. Local‐scale studies typically use fine‐resolution, descriptive measures of community invad...
Predicting the progression of MCI and Alzheimer’s disease on structural brain integrity and other features with machine learningNARA Subscribed
Machine learning (ML) on structural MRI data shows high potential for classifying Alzheimer’s disease (AD) progression, but the specific contribution of brain regions, demographics, and proteinopathy remains unclear. Using Alzheimer’s Disease Neuroimaging Initiative (ADNI) data, we applied an extreme gradient-boosting algorithm and SHAP (SHapley Additive exPlanations) values to classify cognitively normal (CN) older adults, th...
SARS-CoV-2 E and 3a proteins are important for the assembly, budding, and release of viral particles. These two transmembrane proteins have been implicated in forming channels in the membrane that allow the transport of ions to favor viral replication. During an active infection, both proteins generally localize to the endoplasmic reticulum (ER), ER-Golgi intermediate compartment (ERGIC), and the Golgi where viral assembly occ...
Scale‐Dependency of Native Status Classifying populations as native or nonnative requires well‐defined range boundaries for species. While many studies define native status according to large biogeographic realms, natural dispersal barriers often limit species distributions at regional or smaller spatial extents. As such, native/nonnative definitions are inherently scale‐dependent and estimates of community invadedness thus de...
SNAPSHOT USA 2019–2023: The First Five Years of Data From a Coordinated Camera Trap Survey of the United StatesNARA Subscribed
Motivation SNAPSHOT USA is an annual, multicontributor camera trap survey of mammals across the United States. The growing SNAPSHOT USA dataset is intended for tracking the spatial and temporal responses of mammal populations to changes in land use, land cover and climate. These data will be useful for exploring the drivers of spatial and temporal changes in relative abundance and distribution, as well as the impacts of specie...
Microbial respiration is a critical component of the marine carbon cycle, determining the proportion of fixed carbon that is subject to remineralization as opposed to being available for export to the ocean depths. Despite its importance, methodological constraints have led to an inadequate understanding of this process, especially in low-activity oligotrophic and mesopelagic regions. Here, we quantify respiration rates as low...
Coyotes eat flies at carrionNARA Subscribed
Shifting taxonomic and functional community composition of rivers under land use changeNARA Subscribed
Land use intensification has led to conspicuous changes in plant and animal communities across the world. Shifts in trait‐based functional composition have recently been hypothesized to manifest at lower levels of environmental change when compared to species‐based taxonomic composition; however, little is known about the commonalities in these responses across taxonomic groups and geographic regions. We investigated this hypo...