Particulate organic matter settling out of the euphotic zone is a major sink for atmospheric carbon dioxide and serves as a primary food source to mesopelagic food webs. Degradation of this organic matter encompasses a suite of mechanisms that attenuate flux, including heterotrophic metabolic processes of microbes and metazoans. The relative contributions of microbial and metazoan heterotrophy to flux attenuation, however, hav...

A quantitative understanding of the mesopelagic zooplankton food web is key to development of accurate carbon budgets and geochemical models in marine systems. Here we use compound specific nitrogen stable isotope analysis of amino acids to quantify the trophic structure of the microzooplankton and mesozooplankton community during summer in the subarctic northeast Pacific Ocean during the EXport Processes in the Ocean from Rem...

Zooplankton contribute a major component of the vertical flux of particulate organic matter to the ocean interior by packaging consumed food and waste into large, dense fecal pellets that sink quickly. Existing methods for quantifying the contribution of fecal pellets to particulate organic matter use either visual identification or lipid biomarkers, but these methods may exclude fecal material that is not morphologically dist...

Compound‐specific isotope analyses (CSIA) and multivariate “isotope fingerprinting” track biosynthetic sources and reveal trophic interactions in food webs. However, CSIA have not been widely applied in the study of marine symbioses. Here, we exposed a reef coral ( Montipora capitata ) in symbiosis with Symbiodiniaceae algae to experimental treatments (autotrophy, mixotrophy, heterotrophy) to test for trophic shifts and amino...

Ocean warming and the increased prevalence of coral bleaching events threaten coral reefs. However, the biology of corals during and following bleaching events under field conditions is poorly understood. We examined bleaching and postbleaching recovery in Montipora capitata and Porites compressa corals that either bleached or did not bleach during a 2014 bleaching event at three reef locations in Kāne‘ohe Bay, O‘ahu, Hawai‘i....

Many species of micronekton perform diel vertical migrations (DVMs), which ultimately contributes to carbon export to the deep sea. However, not all micronekton species perform DVM, and the nonmigrators, which are often understudied, have different energetic requirements that might be reflected in their trophic ecology. We analyze bulk tissue and whole animal stable nitrogen isotopic compositions ( δ 15 N values) of micronekto...

Dissolved organic nitrogen (DON) can account for a large fraction of the dissolved nitrogen (N) pool in the ocean, but the cycling of marine DON is poorly understood. Recent discoveries that urea‐ and cyanate‐N can be oxidized by some strains of Thaumarchaeota suggest that these abundant microbes may be able to access and oxidize a fraction of the DON pool. However, measurements of the oxidation of N supplied as DON compounds...

Several studies have found that the respiratory demand for carbon by the mesopelagic community exceeds carbon supply through the particulate sinking flux by up to two to three orders of magnitude, suggesting that mesopelagic communities rely on additional overlooked carbon sources. Suspended particles (defined as 0.7–53 μ m) have been suggested as one of these sources but few studies have evaluated their contribution to the me...

Summary Urea nitrogen has been proposed to contribute significantly to nitrification by marine thaumarchaeotes. These inferences are based on distributions of thaumarchaeote urease genes rather than activity measurements. We found that ammonia oxidation rates were always higher than oxidation rates of urea‐derived N in samples from coastal Georgia, USA (means ± SEM: 382 ± 35 versus 73 ± 24 nmol L −1 d −1 , Mann‐Whitney U‐test...

Groundwater inputs are typically overlooked as drivers of environmental change in coastal reef studies. To assess the impact of groundwater discharge on reef biogeochemistry, we examined two fringing reef environments, located in Maunalua Bay on the south shore of O‘ahu, Hawai‘i, that receive large inputs of submarine groundwater discharge. We supplemented 25‐ and 30‐d time series measurements of salinity, water temperature, p...

The effective evaluation of trophic interactions in pelagic food webs is essential for understanding food web ecology, conservation biology, and management. We tested the applicability of compound‐specific isotope analysis of amino acids (CSIA‐AA) for (1) characterizing trophic positions (TPs) of nine species from four trophic groups (tunas, squids, myctophids, and euphausiids) within a pelagic food web in the eastern tropical...

We used bulk tissue δ 13 C and δ 15 N values and δ 15 N values of individual amino acids (AA) to characterize the trophic structure of a pelagic fish assemblage from the North Pacific Subtropical Gyre (NPSG) ecosystem. We focus on energy flow between fishes inhabiting distinct epipelagic, mesopelagic, and upper bathypelagic habitats and on predatory fish foraging across and within these depth habitats. Trophic positions (TPs)...

According to modern oceanographic perspectives that emphasize microbial pathways, phagotrophic protists comprise one to several levels of intermediate consumers between phytoplankton and larger metazooplankton (copepods and krill). However, recent attempts to quantify pelagic trophic structure in the open ocean using nitrogen stable isotope techniques have brought into question whether such measurements adequately account for...