C. A. Sims results 45
· Newest (Page 1/2, per page 25)
Author: C. A. Sims ×Clear All Filters
Search Results
Demography and Localized Reservoirs of Diversity Underlie Global Divergence in the Giant Kelp Macrocystis pyriferaNARA Subscribed
Accurate assessments of genetic diversity are crucial for effective management of natural resources. Numerous evolutionary mechanisms and genetic constraints can shape lineage divergence, challenging our quantification of biodiversity. Here, using whole genome resequencing of globally distributed giant kelp, Macrocystis pyrifera (Order: Laminariales), we show clear separation of genetic groups across the Pacific based on 99 ge...
Unprecedented Burning in Tropical Peatlands During the 20th Century Compared to the Previous Two MillenniaNARA Subscribed
Tropical peatland wildfire incidence has risen in recent decades, driven by drainage for land use and intensified by severe droughts with global climate change. These disturbances have altered vegetation structure, disrupted ecosystem functioning, and increased carbon emissions, particularly in Southeast Asia. However, the long‐term history and characteristics of wildfires in tropical peatlands remain largely unknown. Here, we...
Marine megafauna species are affected by a wide range of anthropogenic threats. To evaluate the risk of such threats, species’ vulnerability to each threat must first be determined. We build on the existing threats classification scheme and ranking system of the International Union for Conservation of Nature (IUCN) Red List of Threatened Species by assessing the vulnerability of 256 marine megafauna species to 23 at‐sea threat...
Reference genomes from representative species across families provide the critical infrastructure for research and conservation. The Cetacean Genomes Project (CGP) began in early 2020 to facilitate the generation of near error-free, chromosome-resolved reference genomes for all cetacean species. Towards that goal, and using the methods, goals and genome assembly quality standards of the Vertebrate Genomes Project (VGP), we gen...
Common, low-frequency, rare, and ultra-rare coding variants contribute to COVID-19 severityNARA Subscribed
The combined impact of common and rare exonic variants in COVID-19 host genetics is currently insufficiently understood. Here, common and rare variants from whole-exome sequencing data of about 4000 SARS-CoV-2-positive individuals were used to define an interpretable machine-learning model for predicting COVID-19 severity. First, variants were converted into separate sets of Boolean features, depending on the absence or the pr...
Meta‐Fish‐Lib : A generalised, dynamic DNA reference library pipeline for metabarcoding of fishesNARA Subscribed
The accuracy and reliability of DNA metabarcoding analyses depend on the breadth and quality of the reference libraries that underpin them. However, there are limited options available to obtain and curate the huge volumes of sequence data that are available on public repositories such as NCBI and BOLD. Here, we provide a pipeline to download, clean and annotate mitochondrial DNA sequence data for a given list of fish species....
Refugia under threat: Mass bleaching of coral assemblages in high‐latitude eastern AustraliaNARA Subscribed
Environmental anomalies that trigger adverse physiological responses and mortality are occurring with increasing frequency due to climate change. At species' range peripheries, environmental anomalies are particularly concerning because species often exist at their environmental tolerance limits and may not be able to migrate to escape unfavourable conditions. Here, we investigated the bleaching response and mortality of 14 co...
Climate and land‐use change are the major drivers of global biodiversity loss. Their effects are particularly acute for wide‐ranging consumers, but little is known about how these factors interact to affect the abundance of large carnivores and their herbivore prey. We analyzed population densities of a primary and secondary consumer (mule deer, Odocoileus hemionus , and mountain lion, Puma concolor ) across a climatic gradien...