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Species identification and haplotype diversity of Sato’s beaked whales using environmental DNA metabarcodingNARA Subscribed
The species identification of whales, dolphins and porpoises at sea remains challenging, particularly for cryptic species like beaked whales (Family: Ziphiidae). Here we use environmental (e)DNA for identification of Sato’s beaked whale, Berardius minimus , at sea. This species was first described in 2019 and, to date, all but one genetic sample has been collected from beachcast carcasses. Sato’s beaked whales are difficult to...
Bottom‐tow gear fisheries (trawls and dredges) produce ~24 million mt of harvest annually, representing a globally important animal‐sourced food system. While many are currently sustainably managed, growing concern over the potential for ecosystem impacts from bottom‐tow gears has increased pressure to improve these fisheries. We assembled an international working group of > 30 contributors, including fishing industry particip...
Introduction Estimating the genetic diversity of cetaceans at sea, particularly abundant social delphinids, can be difficult with traditional biopsy sampling of individuals. Environmental DNA (eDNA) metabarcoding has been shown to be a powerful tool for the identification of species assemblages and estimation of genetic diversity, especially in aquatic environments. Methods We collected 126 samples of seawater from within the...
Lake sturgeon ( Acipenser fulvescens ) growth and longevity estimated from adult capture–mark–recapture dataNARA Subscribed
Effective fishery management policy depends on accurate life‐history data, particularly for harvested species. Longevity is a core life‐history trait that is directly related to annual survival and lifetime reproductive potential, but fish longevity is generally not well documented, particularly for long‐lived species. We used capture–mark–recapture data spanning 44 years as an alternative method to estimate sex‐specific adult...
Interpretable deep learning reveals spatiotemporal MRI features of brain aging that align with neurodegenerationNARA Subscribed
Cortical thinning and atrophy are hallmarks of brain aging that have been characterized using magnetic resonance imaging (MRI). Brain aging involves many neuroanatomic features whose effects on brain structure remain unexplored. To address this challenge, we trained interpretable deep neural networks (DNNs) to estimate brain age (BA) from T 1 -weighted ( T 1 w) MRI. By identifying MRI features unapparent to humans, DNNs can fi...
Distributed optical fibre sensing (DOFS) is a technology that enables continuous, real-time measurements of a range of environmental parameters along the length of a fibre optic cable. In this article, we review the recently emerged applications of DOFS techniques in physical oceanography and offer a perspective on the technology's potential for future growth within the field. The introduction of DOFS to physical oceanography...
Alzheimer’s disease (AD) disproportionately affects women and carriers of the apolipoprotein E ε4 allele (APOE4), yet little is known about how sex and APOE interact to influence white matter (WM) integrity during disease progression. We integrated diffusion MRI and matched blood transcriptomic data to investigate these interactions and their underlying biological mechanisms. WM microstructure was quantified using diffusion te...
In 2024, an expedition was conducted off northwestern Baja California, México, to find and identify the beaked whale species that produced the BW43 echolocation pulse previously recorded in this area and elsewhere in the North Pacific. There were five Mesoplodon sightings and 21 BW43 acoustic detections on both a towed array and drifting pole buoy recorders over the course of the survey. Three of the sightings had concurrent a...
Predicting the progression of MCI and Alzheimer’s disease on structural brain integrity and other features with machine learningNARA Subscribed
Machine learning (ML) on structural MRI data shows high potential for classifying Alzheimer’s disease (AD) progression, but the specific contribution of brain regions, demographics, and proteinopathy remains unclear. Using Alzheimer’s Disease Neuroimaging Initiative (ADNI) data, we applied an extreme gradient-boosting algorithm and SHAP (SHapley Additive exPlanations) values to classify cognitively normal (CN) older adults, th...
The sub‐Antarctic waters of South Georgia Island (Islas Georgias del Sur, SG/IG) are a regularly visited feeding ground for southern right whales ( Eubalaena australis , SRW) in the southwest Atlantic. Satellite telemetry and photo‐identification records were compared to better understand the role of SG/IG in the SRW migratory network. We present the first insights from SRW satellite‐tracked from the SG/IG feeding ground, habi...
Although Hubbs' beaked whale ( Mesoplodon carlhubbsi ) was previously known from over 60 strandings on both sides of the North Pacific, it had been identified alive in the wild only once, off Oregon in 1994. In September 2021, we conducted a search effort for beaked whales off the coast of Oregon using a towed hydrophone array and a visual search team. Approximately 350 km off the Columbia River mouth, we detected the vocaliza...
A surplus no more? Variation in krill availability impacts reproductive rates of Antarctic baleen whalesNARA Subscribed
The krill surplus hypothesis of unlimited prey resources available for Antarctic predators due to commercial whaling in the 20th century has remained largely untested since the 1970s. Rapid warming of the Western Antarctic Peninsula (WAP) over the past 50 years has resulted in decreased seasonal ice cover and a reduction of krill. The latter is being exacerbated by a commercial krill fishery in the region. Despite this, humpba...
Worldwide phylogeography of rough‐toothed dolphins ( Steno bredanensis ) provides evidence for subspecies delimitationNARA Subscribed
Rough‐toothed dolphins ( Steno bredanensis ) have a global tropical and subtropical distribution with oceanic, neritic, and island‐associated populations. To inform conservation and management for this species, we used sequences from the mtDNA control region ( n = 360), mitogenomes ( n = 19), and six nuclear introns ( n = 35) to provide multiple lines of evidence to critically evaluate the potential taxonomic status of rough‐t...
Changes in habitat availability and prey abundance are predicted to adversely influence survival and reproduction of wildlife in the Southern Ocean. Some populations of southern right whale (SRW; Eubalaena australis ) are showing dramatic changes in habitat use. Surveys were undertaken in the austral winters of 2020 and 2021 at the key nursery and socialising ground for New Zealand SRWs: Port Ross, Auckland Islands, with 548 e...
Southern right whales (SRW) are capital breeders that use stored energy reserves to sustain themselves and their calves on nursery areas. With successful calving events declining in some SRW populations, it has been hypothesized that nutritional stress in adult females causes reproductive failure or death of calves shortly after birth. Here we compared offsets in carbon and nitrogen isotope values of mothers and their offsprin...
Commerson’s dolphins ( Cephalorhynchus commersonii ) are separated into the subspecies C. c. commersonii , found along southern South America (SA) and the Falkland Islands/Islas Malvinas (FI/IM), and C. c. kerguelenensis , restricted to the subantarctic Kerguelen Islands (KI). Following the dispersal model proposed for the genus, the latter is thought to have originated from SA after a long-distance dispersal event. To evaluat...