Atlantic salmon, Salmo salar , migrate through multiple habitat types, each having the potential to impact differently upon migration success. The inshore marine coastal zone is arguably disproportionately impacted by potential stressors on populations. We investigated the migration of Atlantic salmon post‐smolts ( n = 898) from eight rivers (populations) through the inshore marine coastal zone over a 2‐year period using acous...

There is some evidence that the river migration success of Atlantic salmon smolts, on their first migration to sea, varies both spatially and temporally. However, we have only a poor understanding of what may be driving this variation. In this study, we used acoustic telemetry to quantify the spatial and temporal variations in river migration success in Atlantic salmon smolts on their first migration to sea. In total 4120 Atla...

Early detection of marine invasive species is key for mitigating and managing their impacts to marine ecosystems and industries. Human divers are considered the gold standard tool for detecting marine invasive species, especially when dive teams are familiar with the local biodiversity. However, diver operations can be expensive and dangerous, and are not always practical. Remote operated vehicles (ROVs) can potentially overco...

The microsporidian Desmozoon lepeophtherii Freeman and Sommerville, 2009 is considered significant in the pathogenesis of gill disease in Atlantic salmon ( Salmo salar Linnaeus, 1758). Due to the difficulty in detecting D. lepeophtherii in tissue sections, infections are normally diagnosed by molecular methods, routine haematoxylin and eosin (H&E) stained gill tissue sections and the use of other histochemical stains and label...

An understanding of husbandry strategies and any associated risk factors is important for designing management control measures that can reduce mortality in Pacific oysters, Crassostrea gigas , caused by ostreid herpesvirus 1 (Os HV ‐1). The type of culture facility can be considered in relation to the potential pathways that could lead to the entry of a pathogen and its survival. In addition, the animal host (e.g. age, physio...

Summary Chemolithoautotrophic bacteria from the genera Hydrogenovibrio, Thiomicrorhabdus and Thiomicrospira are common, sometimes dominant, isolates from sulfidic habitats including hydrothermal vents, soda and salt lakes and marine sediments. Their genome sequences confirm their membership in a deeply branching clade of the Gammaproteobacteria . Several adaptations to heterogeneous habitats are apparent. Their genomes include...