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Interpretable deep learning reveals spatiotemporal MRI features of brain aging that align with neurodegenerationNARA Subscribed
Cortical thinning and atrophy are hallmarks of brain aging that have been characterized using magnetic resonance imaging (MRI). Brain aging involves many neuroanatomic features whose effects on brain structure remain unexplored. To address this challenge, we trained interpretable deep neural networks (DNNs) to estimate brain age (BA) from T 1 -weighted ( T 1 w) MRI. By identifying MRI features unapparent to humans, DNNs can fi...
Alzheimer’s disease (AD) disproportionately affects women and carriers of the apolipoprotein E ε4 allele (APOE4), yet little is known about how sex and APOE interact to influence white matter (WM) integrity during disease progression. We integrated diffusion MRI and matched blood transcriptomic data to investigate these interactions and their underlying biological mechanisms. WM microstructure was quantified using diffusion te...
Predicting the progression of MCI and Alzheimer’s disease on structural brain integrity and other features with machine learningNARA Subscribed
Machine learning (ML) on structural MRI data shows high potential for classifying Alzheimer’s disease (AD) progression, but the specific contribution of brain regions, demographics, and proteinopathy remains unclear. Using Alzheimer’s Disease Neuroimaging Initiative (ADNI) data, we applied an extreme gradient-boosting algorithm and SHAP (SHapley Additive exPlanations) values to classify cognitively normal (CN) older adults, th...
What Is a Specialist? Quantifying Host Breadth Enables Impact Prediction for Invasive HerbivoresNARA Subscribed
Herbivores are commonly classified as host specialists or generalists for various purposes, yet the definitions of these terms, and their intermediates, are often imprecise and ambiguous. We quantified host breadth for 240 non‐native, tree‐feeding insects in North America using phylogenetic diversity. We demonstrated that a partitioning of host breadth: (1) causes 67% of non‐native insects to shift from a generalist to special...
The decision to establish a network of researchers centers on identifying shared research goals. Ecologically specific regions, such as the USA’s National Ecological Observatory Network’s (NEON’s) eco-climatic domains, are ideal locations by which to assemble researchers with a diverse range of expertise but focused on the same set of ecological challenges. The recently established Great Lakes User Group (GLUG) is NEON’s first...
Supporting Spartina : Interdisciplinary perspective shows Spartina as a distinct solid genusNARA Subscribed
In 2014, a DNA‐based phylogenetic study confirming the paraphyly of the grass subtribe Sporobolinae proposed the creation of a large monophyletic genus Sporobolus , including (among others) species previously included in the genera Spartina , Calamovilfa , and Sporobolus. Spartina species have contributed substantially (and continue contributing) to our knowledge in multiple disciplines, including ecology, evolutionary biology...
Global‐scale patterns of assemblage structure of soil nematodes in relation to climate and ecosystem propertiesNARA Subscribed
Aim To conduct the first global‐scale investigation of soil nematode assemblages using a standardized approach to quantify how environmental and climatic variables influence family assemblage structure in nematodes and determine whether nematode families have restricted distributions. Location Global. Methods We collected soil nematodes within four 10 m × 10 m plots distributed evenly along a 900‐m transect at each of 12 sites...
Microsatellite primers for Australian recreationally and commercially important estuarine fishesNARA Subscribed
Eight primer sets that amplify microsatellite DNA loci were developed for the estuarine fishes, dusky flathead Platycephalus fuscus and sand whiting Sillago ciliata , which are targets of recreational and commercial fishers on the east coast of Australia. Surveys across these loci revealed remarkably similar levels of genetic diversity within samples of c . 22 P. fuscus and S. ciliata from each of the two estuaries. These loci...
Gamete compatibility between marine and estuarine Acanthopagrus spp. (Sparidae) and their hybridsNARA Subscribed
On Australia's south‐east coast, hybridization between estuary‐restricted black bream Acanthopagrus butcheri Munro and its migratory coastal congener yellowfin bream Acanthopagrus australis (Günther) has led to estuarine populations largely composed of hybrids that are most genetically similar to A. butcheri . The fertilization success achieved when ova of estuary‐caught A. butcheri were fertilized with the cryogenically prese...