D. Comte results 19
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Interplay Between Species Traits, Community and Environmental Context Governs Temporal Stability in Riverine Fish PopulationsNARA Subscribed
Understanding the mechanisms underlying the temporal stability of ecological systems remains a challenge. Although temporal stability in populations is posited to emerge from the interplay between intrinsic and extrinsic factors, the nature of these interactions remains poorly understood. Here, we analysed abundance time‐series for 7912 populations from 287 fish species across 1557 streams spanning multiple biogeographic realm...
Combined resistance mechanisms leading to high-level of cefiderocol resistance among NDM-like producing E. coli ST167 clinical isolatesNARA Subscribed
Summary Purpose A series of NDM-producing Escherichia coli ST167 clinical isolates exhibiting resistance to cefiderocol (FDC), with no previous exposure to this antibiotic, were analyzed in this study. Methods The antimicrobial susceptibility testing and phenotypic detection of resistance patterns (Rapid Cefiderocol NP test and MIC determination) were performed for all tested isolates. Their entire genomes were sequenced by us...
Anticipating the risk of species invasions in new geographical regions remains fundamental to conservation. One critical assumption is that species' environmental niches remain stable under changing environments. If native environmental drivers predict introduced distributions, we would expect high overlap in niche space between native and introduced ranges, with introduced niche increasingly resembling their native niche over...
Motivation Here, we make available a second version of the BioTIME database, which compiles records of abundance estimates for species in sample events of ecological assemblages through time. The updated version expands version 1.0 of the database by doubling the number of studies and includes substantial additional curation to the taxonomic accuracy of the records, as well as the metadata. Moreover, we now provide an R packag...
Molecular analysis of metallo-beta-lactamase-producing Pseudomonas aeruginosa in Switzerland 2022–2023NARA Subscribed
Objectives The occurrence of metallo-beta-lactamase-producing Pseudomonas aeruginosa (MBL-PA) isolates is increasing globally, including in Switzerland. The aim of this study was to characterise, phenotypically and genotypically, the MBL-PA isolates submitted to the Swiss National Reference Center for Emerging Antibiotic Resistance (NARA) reference laboratory over a 12-month period from July 2022 to July 2023. Methods Thirty-n...
Understanding temporal variability across trophic levels and spatial scales in freshwater ecosystemsNARA Subscribed
A tenet of ecology is that temporal variability in ecological structure and processes tends to decrease with increasing spatial scales (from locales to regions) and levels of biological organization (from populations to communities). However, patterns in temporal variability across trophic levels and the mechanisms that produce them remain poorly understood. Here we analyzed the abundance time series of spatially structured co...
Scale of population synchrony confirms macroecological estimates of minimum viable range sizeNARA Subscribed
Global ecosystems are facing a deepening biodiversity crisis, necessitating robust approaches to quantifying species extinction risk. The lower limit of the macroecological relationship between species range and body size has long been hypothesized as an estimate of the relationship between the minimum viable range size (MVRS) needed for species persistence and the organismal traits that affect space and resource requirements....
Dendritic habitats, such as river ecosystems, promote the persistence of species by favouring spatial asynchronous dynamics among branches. Yet, our understanding of how network topology influences metapopulation synchrony in these ecosystems remains limited. Here, we introduce the concept of fluvial synchrogram to formulate and test expectations regarding the geography of metapopulation synchrony across watersheds. By combini...
RivFishTIME: A global database of fish time‐series to study global change ecology in riverine systemsNARA Subscribed
Motivation We compiled a global database of long‐term riverine fish surveys from 46 regional and national monitoring programmes and from individual academic research efforts, with which numerous basic and applied questions in ecology and global change research can be explored. Such spatially and temporally extensive datasets have been lacking for freshwater systems in comparison to terrestrial ones. Main types of variables con...
Enhancing our understanding of fish dispersal is central to the success of modern‐day conservation efforts in freshwater ecosystems. However, methods seeking to estimate dispersal are diverse; ranging from direct estimation of individual movements, computation of dispersal kernels, to indirect assessment using measures of gene flow across riverscapes. An important question is whether results from these different approaches pro...
Evolutionary and environmental determinants of freshwater fish thermal tolerance and plasticityNARA Subscribed
Understanding the extent to which phylogenetic constraints and adaptive evolutionary forces help define the physiological sensitivity of species is critical for anticipating climate‐related impacts in aquatic environments. Yet, whether upper thermal tolerance and plasticity are shaped by common evolutionary and environmental mechanisms remains to be tested. Based on a systematic literature review, we investigated this question...
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