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NCBI Orthologs: Public Resource and Scalable Method for Computing High-Precision Orthologs Across Eukaryotic GenomesNARA Subscribed
Orthologs are fundamental for enabling comparative genomics analyses that further our understanding of eukaryotic biology. The unprecedented increase in the availability of high-quality eukaryotic genomes necessitates scalable and accurate methods for orthology inference. The National Center for Biotechnology Information (NCBI) developed “NCBI Orthologs”, a resource and a computational pipeline designed to meet this challenge...
Conservation measures require accurate estimates of density and abundance and population trend assessments. The bonobo ( Pan paniscus ) is considered Endangered in the IUCN Red List. This classification assumes that available population data are representative. However, with only 30% of the bonobo’s historic geographical range surveyed, reliable information is needed to assess the species' population status. Here, we use infor...
The article “Gravity reference at the Argentinean–German Geodetic Observatory (AGGO) by co-location of superconducting and absolute gravity measurements”, written by Ezequiel D. Antokoletz, Hartmut Wziontek, Claudia N. Tocho, Reinhard Falk, was originally published Online First without Open Access.
The Argentinean–German Geodetic Observatory (AGGO) is a fundamental geodetic observatory located close to the city of La Plata, Argentina. Two high-precision gravity meters are installed at AGGO: the superconducting gravimeter SG038, which is in operation since December 2015, and the absolute gravimeter FG5-227, which has provided absolute gravity measurements since January 2018. By co-location of gravity observations from bot...
Tundra-breeding birds face diverse conservation challenges, from accelerated rates of Arctic climate change to threats associated with highly migratory life histories. Here we summarise the status and trends of Arctic terrestrial birds (88 species, 228 subspecies or distinct flyway populations) across guilds/regions, derived from published sources, raw data or, in rare cases, expert opinion. We report long-term trends in vital...
Motivation The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community‐led open‐source database of biodiversity time series. Our goal is to accelerate and facilitate quantitative analysis of temporal...
Auxotrophy and intrapopulation complementary in the ‘interactome’ of a cultivated freshwater model communityNARA Subscribed
Microorganisms are usually studied either in highly complex natural communities or in isolation as monoclonal model populations that we manage to grow in the laboratory. Here, we uncover the biology of some of the most common and yet‐uncultured bacteria in freshwater environments using a mixed culture from Lake Grosse Fuchskuhle. From a single shotgun metagenome of a freshwater mixed culture of low complexity, we recovered fou...
The salmonid orthomyxovirus infectious salmon anaemia virus ( ISAV ) causes disease of varying severity in farmed A tlantic salmon, S almo salar L . Field observations suggest that host factors, the environment and differences between ISAV strains attribute to the large variation in disease progression. Variation in host mortality and dissemination of ISAV isolates with high and low virulence (based on a previously published i...
Unsupported inferences of high‐severity fire in historical dry forests of the western U nited S tates: response to W illiams and B akerNARA Subscribed
Reconstructions of dry western US forests in the late 19th century in A rizona, C olorado and O regon based on G eneral L and O ffice records were used by W illiams & B aker (2012; G lobal E cology and B iogeography , 21 , 1042–1052; hereafter W & B ) to infer past fire regimes with substantial moderate and high‐severity burning. The authors concluded that present‐day large, high‐severity fires are not distinguishable from his...
Evidence for a venomous SinornithosaurusNARA Subscribed
Intracellular inclusions containing chlamydia‐like organisms are frequently observed in the gill epithelial cells of Atlantic salmon, Salmo salar L., cultured in fresh water in Ireland. In this study, the causative agent was identified in four separate freshwater sites, using 16s rRNA sequencing, as ‘ Candidatus Clavochlamydia salmonicola’. Histopathology and real‐time (RT) PCR were used to further assess infections. The preva...