D. Strachan results 17
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Using pollen in turbidites for vegetation reconstructionsNARA Subscribed
Turbidites, deposited by sub‐aqueous gravity flows, are common in sedimentary archives worldwide and present a unique challenge and opportunity when reconstructing past vegetation through pollen analysis. When sampling pollen from a sediment core for palaeovegetation records, it is common practice to target background sediments (i.e. pelagic sediment) and avoid sampling turbidites, as they are presumed to portray a misleading...
Common, low-frequency, rare, and ultra-rare coding variants contribute to COVID-19 severityNARA Subscribed
The combined impact of common and rare exonic variants in COVID-19 host genetics is currently insufficiently understood. Here, common and rare variants from whole-exome sequencing data of about 4000 SARS-CoV-2-positive individuals were used to define an interpretable machine-learning model for predicting COVID-19 severity. First, variants were converted into separate sets of Boolean features, depending on the absence or the pr...
Environmental controls on the distribution of salt‐marsh foraminifera from the southern coastline of South AfricaNARA Subscribed
Aim Salt‐marsh foraminifera are widely used as robust sea‐level indicators. High‐resolution Holocene sea‐level reconstructions depend on the accurate characterization of modern foraminifera‐environment relationships representative of a study site. We investigate the relationship between modern foraminiferal assemblage distribution and key environmental variables, viz . elevation above land levelling datum ( LLD ), sediment gra...
Rare taxa have potential to make metabolic contributions in enhanced biological phosphorus removal ecosystemsNARA Subscribed
Summary Enhanced biological phosphorus removal ( EBPR ) relies on diverse but specialized microbial communities to mediate the cycling and ultimate removal of phosphorus from municipal wastewaters. However, little is known about microbial activity and dynamics in relation to process fluctuations in EBPR ecosystems. Here, we monitored temporal changes in microbial community structure and potential activity across each bioreacto...
Homologous recombination between bacterial strains is theoretically capable of preventing the separation of daughter clusters, and producing cohesive clouds of genotypes in sequence space. However, numerous barriers to recombination are known. Barriers may be essential such as adaptive incompatibility, or ecological, which is associated with the opportunities for recombination in the natural habitat. Campylobacter jejuni is a...
Hybridization between distantly related organisms can facilitate rapid adaptation to novel environments, but is potentially constrained by epistatic fitness interactions among cell components. The zoonotic pathogens C ampylobacter coli and C . jejuni differ from each other by around 15% at the nucleotide level, corresponding to an average of nearly 40 amino acids per protein‐coding gene. Using whole genome sequencing, we show...
Niche segregation and genetic structure of Campylobacter jejuni populations from wild and agricultural host speciesNARA Subscribed
Bacterial populations can display high levels of genetic structuring but the forces that influence this are incompletely understood. Here, by combining modelling approaches with multilocus sequence data for the zoonotic pathogen Campylobacter, we investigated how ecological factors such as niche (host) separation relate to population structure. We analysed seven housekeeping genes from published C. jejuni and C. coli isolate c...
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