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Interpretable deep learning reveals spatiotemporal MRI features of brain aging that align with neurodegenerationNARA Subscribed
Cortical thinning and atrophy are hallmarks of brain aging that have been characterized using magnetic resonance imaging (MRI). Brain aging involves many neuroanatomic features whose effects on brain structure remain unexplored. To address this challenge, we trained interpretable deep neural networks (DNNs) to estimate brain age (BA) from T 1 -weighted ( T 1 w) MRI. By identifying MRI features unapparent to humans, DNNs can fi...
‘Megafire’—You May Not Like It, But You Cannot Avoid ItNARA Subscribed
Aim The term ‘megafire’ is increasingly used to describe large fires worldwide. We proposed a size‐based definition of megafire—fires exceeding 10,000 ha arising from single or multiple related ignition events. A recent perspective in Global Ecology and Biogeography argues against a size‐based definition of megafire and suggest that the term is too emotive for scientific use. We highlight that many scientific terms originate f...
Germline copy number variants and endometrial cancer riskNARA Subscribed
Known risk loci for endometrial cancer explain approximately one third of familial endometrial cancer. However, the association of germline copy number variants (CNVs) with endometrial cancer risk remains relatively unknown. We conducted a genome-wide analysis of rare CNVs overlapping gene regions in 4115 endometrial cancer cases and 17,818 controls to identify functionally relevant variants associated with disease. We identif...
Factors influencing variation in reproduction in invasive species: a case study of the Asian shore crab Hemigrapsus sanguineusNARA Subscribed
Reproductive success is a strong determinant of invasive species success. It is common for studies on invasive species to assess reproduction by measuring size-specific fecundity and scaling this up using population size or densities. Yet, reproductive success is influenced by numerous factors that are not accounted for in such calculations. We examined the influence of several factors on fecundity (clutch size) and egg size i...
Dominance and rarity in tree communities across the globe: Patterns, predictors and threatsNARA Subscribed
Aim Ecological and anthropogenic factors shift the abundances of dominant and rare tree species within local forest communities, thus affecting species composition and ecosystem functioning. To inform forest and conservation management it is important to understand the drivers of dominance and rarity in local tree communities. We answer the following research questions: (1) What are the patterns of dominance and rarity in tree...
What do you mean, ‘megafire’?NARA Subscribed
Background ‘Megafire’ is an emerging concept commonly used to describe fires that are extreme in terms of size, behaviour, and/or impacts, but the term’s meaning remains ambiguous. Approach We sought to resolve ambiguity surrounding the meaning of ‘megafire’ by conducting a structured review of the use and definition of the term in several languages in the peer‐reviewed scientific literature. We collated definitions and descri...
Demographic composition, not demographic diversity, predicts biomass and turnover across temperate and tropical forestsNARA Subscribed
The growth and survival of individual trees determine the physical structure of a forest with important consequences for forest function. However, given the diversity of tree species and forest biomes, quantifying the multitude of demographic strategies within and across forests and the way that they translate into forest structure and function remains a significant challenge. Here, we quantify the demographic rates of 1961 tr...
Common, low-frequency, rare, and ultra-rare coding variants contribute to COVID-19 severityNARA Subscribed
The combined impact of common and rare exonic variants in COVID-19 host genetics is currently insufficiently understood. Here, common and rare variants from whole-exome sequencing data of about 4000 SARS-CoV-2-positive individuals were used to define an interpretable machine-learning model for predicting COVID-19 severity. First, variants were converted into separate sets of Boolean features, depending on the absence or the pr...
Measuring fish population responses to climate change requires timely ecological information, warranting innovative approaches to data collection in fisheries research and management. Fourier transform near-infrared (FT-NIR) spectroscopy is a promising tool to efficiently and cost-effectively obtain multiple types of fisheries data including fish physiological health and energetics that can provide indicators of stock status a...
Front CoverNARA Subscribed
Global importance of large‐diameter treesNARA Subscribed
Aim To examine the contribution of large‐diameter trees to biomass, stand structure, and species richness across forest biomes. Location Global. Time period Early 21st century. Major taxa studied Woody plants. Methods We examined the contribution of large trees to forest density, richness and biomass using a global network of 48 large (from 2 to 60 ha) forest plots representing 5,601,473 stems across 9,298 species and 210 plan...
A comparison of pollen extraction methods confirms dense‐media separation as a reliable method of pollen preparationNARA Subscribed
Palynology is a crucial proxy for understanding Quaternary environmental change. A range of laboratory preparation techniques has been developed to deal with the extraction of pollen in different sedimentary contexts. Here, we present a comparison of the conventional hydrofluoric acid method and the dense‐media separation method using sodium polytungstate. We examine pollen, non‐pollen palynomorphs (NPPs) and microcharcoal by...
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