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Freshwater biodiversity in a rapidly changing Arctic: An expert horizon scan of key research questionsNARA Subscribed
Arctic freshwater biodiversity is rapidly changing due to climate warming, resource extraction, infrastructure development, and landscape transformation. To improve understanding, predict future responses, and inform policy formulation, research needs must be clearly identified. Using a horizon scan survey, Arctic freshwater experts from government, international agencies, and Indigenous Peoples identified 77 biodiversity rese...
Constitutive Differences in Immune Gene Expression Are Correlated With Wood Frog Populations From Contrasting Winter EnvironmentsNARA Subscribed
Many terrestrial ectotherms have gone to great evolutionary lengths to adapt to long cold winters; some have even evolved the ability to tolerate the freezing of most of the extracellular fluid in the body. Now, however, high‐elevation and high‐latitude winters are experiencing an accelerated period of warming. Specialised winter adaptations that promoted fitness in a seasonally frozen environment may soon be superfluous or ev...
Parasitic infections are a global occurrence and impact the health of many species. Coinfections, where two or more species of parasite are present in a host, are a common phenomenon across species. Coinfecting parasites can interact directly or indirectly via their manipulation of (and susceptibility to) the immune system of their shared host. Helminths, such as the cestode Schistocephalus solidus , are well known to suppress...
Contemporary changes in phenotypic variation, and the potential consequences for eco‐evolutionary dynamicsNARA Subscribed
Most studies assessing rates of phenotypic change focus on population mean trait values, whereas a largely overlooked additional component is changes in population trait variation. Theoretically, eco‐evolutionary dynamics mediated by such changes in trait variation could be as important as those mediated by changes in trait means. To date, however, no study has comprehensively summarised how phenotypic variation is changing in...
Species divergence under competition and shared predationNARA Subscribed
Species competing for resources also commonly share predators. While competition often drives divergence between species, the effects of shared predation are less understood. Theoretically, competing prey species could either diverge or evolve in the same direction under shared predation depending on the strength and symmetry of their interactions. We took an empirical approach to this question, comparing antipredator and trop...
Between‐population differences in constitutive and infection‐induced gene expression in threespine sticklebackNARA Subscribed
Vertebrate immunity is a complex system consisting of a mix of constitutive and inducible defences. Furthermore, host immunity is subject to selective pressure from a range of parasites and pathogens which can produce variation in these defences across populations. As populations evolve immune responses to parasites, they may adapt via a combination of (1) constitutive differences, (2) shared inducible responses, or (3) diverg...
What evolutionary processes maintain MHC IIꞵ diversity within and among populations of stickleback?NARA Subscribed
Major Histocompatibility Complex (MHC) genes code for proteins that recognize foreign protein antigens to initiate T‐cell‐mediated adaptive immune responses. They are often the most polymorphic genes in vertebrate genomes. How evolution maintains this diversity remains of debate. Three main hypotheses seek to explain the maintenance of MHC diversity by invoking pathogen‐mediated selection: heterozygote advantage, frequency‐dep...
The genomic signature of ecological divergence along the benthic‐limnetic axis in allopatric and sympatric threespine sticklebackNARA Subscribed
The repeated occurrence of similar phenotypes in independent lineages (i.e., parallel evolution) in response to similar ecological conditions can provide compelling insights into the process of adaptive evolution. An intriguing question is to what extent repeated phenotypic changes are underlain by repeated changes at the genomic level and whether patterns of genomic divergence differ with the geographic context in which popul...
Scale‐dependent effects of host patch traits on species composition in a stickleback parasite metacommunityNARA Subscribed
A core goal of ecology is to understand the abiotic and biotic variables that regulate species distributions and community composition. A major obstacle is that the rules governing species distributions can change with spatial scale. Here, we illustrate this point using data from a spatially nested metacommunity of parasites infecting a metapopulation of threespine stickleback fish from 34 lakes on Vancouver Island, British Co...
Resource diversity promotes among‐individual diet variation, but not genomic diversity, in lake sticklebackNARA Subscribed
Many generalist species consist of specialised individuals that use different resources. This within‐population niche variation can stabilise population and community dynamics. Consequently, ecologists wish to identify environmental settings that promote such variation. Theory predicts that environments with greater resource diversity favour ecological diversity among consumers (via disruptive selection or plasticity). Alterna...
Natural selection on MHC IIβ in parapatric lake and stream stickleback: Balancing, divergent, both or neither?NARA Subscribed
Major histocompatibility complex (MHC) genes encode proteins that play a central role in vertebrates' adaptive immunity to parasites. MHC loci are among the most polymorphic in vertebrates' genomes, inspiring many studies to identify evolutionary processes driving MHC polymorphism within populations and divergence between populations. Leading hypotheses include balancing selection favouring rare alleles within populations, and...
Selection against migrants is key to maintaining genetic differences between populations linked by dispersal. However, migrants may mitigate fitness costs by proactively choosing among available habitats, or by phenotypic plasticity. We previously reported that a reciprocal transplant of lake and stream stickleback ( Gasterosteus aculeatus ) found little support for divergent selection. Here, we revisit that experiment to test...
The light environment influences an animal's ability to forage, evade predators, and find mates, and consequently is known to drive local adaptation of visual systems. However, the light environment may also vary over fine spatial scales at which genetic adaptation is difficult. For instance, in aquatic systems, the available wavelengths of light change over a few metres depth. Do animals plastically adjust their visual system...
Among‐lake reciprocal transplants induce convergent expression of immune genes in threespine sticklebackNARA Subscribed
Geographic variation in parasite communities can drive evolutionary divergence in host immune genes. However, biotic and abiotic environmental variation can also induce plastic differences in immune function among populations. At present, there is little information concerning the relative magnitudes of heritable vs. induced immune divergence in natural populations. We examined immune gene expression profiles of threespine sti...
Demystifying the RAD fadNARA Subscribed
We are writing in response to the population and phylogenomics meeting review by Andrews & Luikart ( ) entitled ‘Recent novel approaches for population genomics data analysis’. Restriction‐site‐associated DNA ( RAD ) sequencing has become a powerful and useful approach in molecular ecology, with several different published methods now available to molecular ecologists, none of which can be considered the best option in all sit...
Major H istocompatibility C omplex class II b polymorphism influences gut microbiota composition and diversityNARA Subscribed
Animals harbour diverse communities of symbiotic bacteria, which differ dramatically among host individuals. This heterogeneity poses an immunological challenge: distinguishing between mutualistic and pathogenic members of diverse and host‐specific microbial communities. We propose that M ajor H istocompatibility class II ( MHC ) genotypes contribute to recognition and regulation of gut microbes, and thus, MHC polymorphism con...
Individuals' diet diversity influences gut microbial diversity in two freshwater fish (threespine stickleback and Eurasian perch)NARA Subscribed
Vertebrates' diets profoundly influence the composition of symbiotic gut microbial communities. Studies documenting diet‐microbiota associations typically focus on univariate or categorical diet variables. However, in nature individuals often consume diverse combinations of foods. If diet components act independently, each providing distinct microbial colonists or nutrients, we expect a positive relationship between diet diver...
An evolutionary ecology of individual differencesNARA Subscribed
Individuals often differ in what they do. This has been recognised since antiquity. Nevertheless, the ecological and evolutionary significance of such variation is attracting widespread interest, which is burgeoning to an extent that is fragmenting the literature. As a first attempt at synthesis, we focus on individual differences in behaviour within populations that exceed the day‐to‐day variation in individual behaviour (i.e...
The ecological causes of individual specialisationNARA Subscribed
Ecology Letters (2011) 14 : 948–958 Abstract Many generalist populations are composed of specialised individuals, whose niches are small subsets of the population niche. This ‘individual specialisation’ is a widespread phenomenon in natural populations, but until recently few studies quantified the magnitude of individual specialisation and how this magnitude varies among populations or contexts. Such quantitative approaches a...
Specialization of trophic position and habitat use by sticklebacks in an adaptive radiationNARA Subscribed
Divergence in habitat use among closely related species is a common characteristic of adaptive radiations. Large differences in the size structure of prey between habitats could strengthen disruptive selection on generalist predators and lead to a divergence in trophic position among species in an adaptive radiation. Using threespine stickleback ( Gasterosteus aculeatus ) in freshwater lakes as a model system, we examined whet...
Predators influence prey populations both by consuming individual prey, and by inducing changes in prey behaviour that limit reproduction and survival. Because prey trade‐off predation risk for forageing gains, the magnitude of predators’ non‐consumptive effects should depend on resource availability. Studies of non‐consumptive effects generally adopt either of two strategies: (i) maintaining a static ration of the prey’s reso...
Revisiting the Classics: Considering Nonconsumptive Effects in Textbook Examples of Predator–prey InteractionsNARA Subscribed
Predator effects on prey dynamics are conventionally studied by measuring changes in prey abundance attributed to consumption by predators. We revisit four classic examples of predator–prey systems often cited in textbooks and incorporate subsequent studies of nonconsumptive effects of predators (NCE), defined as changes in prey traits (e.g., behavior, growth, development) measured on an ecological time scale. Our review revea...