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Ancient date palm cultivation in the southern Levant: a morphometric analysis of archaeological seeds from the Negev desertNARA Subscribed
We analysed the spatio-temporal dynamics of Phoenix dactylifera (date palm) agrobiodiversity in the Negev desert, southern Levant, from the 3rd c. bce to the 10th c. ce . We applied linear measurements and Elliptic Fourier Descriptors to 2294 archaeological seeds from nine sites, and compared them with a modern reference collection of wild and cultivated Phoenix and previously published archaeological assemblages from Egypt an...
Interpretable deep learning reveals spatiotemporal MRI features of brain aging that align with neurodegenerationNARA Subscribed
Cortical thinning and atrophy are hallmarks of brain aging that have been characterized using magnetic resonance imaging (MRI). Brain aging involves many neuroanatomic features whose effects on brain structure remain unexplored. To address this challenge, we trained interpretable deep neural networks (DNNs) to estimate brain age (BA) from T 1 -weighted ( T 1 w) MRI. By identifying MRI features unapparent to humans, DNNs can fi...
Fish Gastrointestinal Microbiome Alterations Associated with Environmental and Host FactorsOA Marine
Gastrointestinal microbiota (GIM) play a crucial role in host physiology and are modulated by host biology, environmental conditions, and temporal dynamics. The GIM of two types of fishes, the redbreast sunfish (Lepomis auritus) and the bullhead catfish (Ameiurus spp.), from three streams over two seasons were sampled for host health (hepatosomatic index, Fulton’s condition factor), age, and additional environmental metadata....
Predicting the progression of MCI and Alzheimer’s disease on structural brain integrity and other features with machine learningNARA Subscribed
Machine learning (ML) on structural MRI data shows high potential for classifying Alzheimer’s disease (AD) progression, but the specific contribution of brain regions, demographics, and proteinopathy remains unclear. Using Alzheimer’s Disease Neuroimaging Initiative (ADNI) data, we applied an extreme gradient-boosting algorithm and SHAP (SHapley Additive exPlanations) values to classify cognitively normal (CN) older adults, th...
The relational shift in urban ecology: From place and structures to multiple modes of coproduction for positive urban futuresNARA Subscribed
This perspective emerged from ongoing dialogue among ecologists initiated by a virtual workshop in 2021. A transdisciplinary group of researchers and practitioners conclude that urban ecology as a science can better contribute to positive futures by focusing on relationships, rather than prioritizing urban structures. Insights from other relational disciplines, such as political ecology, governance, urban design, and conservat...
A transformative shift in urban ecology toward a more active and relevant future for the field and for citiesNARA Subscribed
This paper builds on the expansion of urban ecology from a biologically based discipline—ecology in the city—to an increasingly interdisciplinary field—ecology of the city—to a transdisciplinary, knowledge to action endeavor—an ecology for and with the city. We build on this “prepositional journey” by proposing a transformative shift in urban ecology, and we present a framework for how the field may continue this shift. We con...
The impact of COVID on bacterial sepsisNARA Subscribed
Exercise is a cornerstone of preventive medicine and a promising strategy to intervene on the biology of aging. Variation in the response to exercise is a widely accepted concept that dates back to the 1980s with classic genetic studies identifying sequence variations as modifiers of the VO 2 max response to training. Since that time, the literature of exercise response variance has been populated with retrospective analyses o...
A new set of estimated cardiorespiratory fitness equations are associated with cognitive performance in older adultsNARA Subscribed
This study aimed to develop new equations to estimate cardiorespiratory fitness specifically for older adults and, secondly, to analyze the associations of cardiorespiratory fitness, both objectively measured and estimated using new equations, with cognitive performance. Ninety-two older adults (41 females, 65–75 years) from baseline data of a randomized controlled trial were analyzed (“ClinicalTrials.gov” Identifier: NCT03923...
Global maps of soil temperatureNARA Subscribed
Research in global change ecology relies heavily on global climatic grids derived from estimates of air temperature in open areas at around 2 m above the ground. These climatic grids do not reflect conditions below vegetation canopies and near the ground surface, where critical ecosystem functions occur and most terrestrial species reside. Here, we provide global maps of soil temperature and bioclimatic variables at a 1‐km 2 r...
Geologic legacy spanning >90 years explains unique Yellowstone hot spring geochemistry and biodiversityNARA Subscribed
Summary Little is known about how the geological history of an environment shapes its physical and chemical properties and how these, in turn, influence the assembly of communities. Evening primrose (EP), a moderately acidic hot spring (pH 5.6, 77.4°C) in Yellowstone National Park (YNP), has undergone dramatic physicochemical change linked to seismic activity. Here, we show that this legacy of geologic change led to the develo...
Improvements in Life Cycle Energy Efficiency and Greenhouse Gas Emissions of Corn‐EthanolNARA Subscribed
Summary Corn‐ethanol production is expanding rapidly with the adoption of improved technologies to increase energy efficiency and profitability in crop production, ethanol conversion, and coproduct use. Life cycle assessment can evaluate the impact of these changes on environmental performance metrics. To this end, we analyzed the life cycles of corn‐ethanol systems accounting for the majority of U.S. capacity to estimate gree...