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Interpretable deep learning reveals spatiotemporal MRI features of brain aging that align with neurodegenerationNARA Subscribed
Cortical thinning and atrophy are hallmarks of brain aging that have been characterized using magnetic resonance imaging (MRI). Brain aging involves many neuroanatomic features whose effects on brain structure remain unexplored. To address this challenge, we trained interpretable deep neural networks (DNNs) to estimate brain age (BA) from T 1 -weighted ( T 1 w) MRI. By identifying MRI features unapparent to humans, DNNs can fi...
The Comprehensive Assessment of Long-term Effects of Reducing Intake of Energy (CALERIE)™ trial was a randomized, 2-year controlled trial of caloric restriction (CR) versus an ad libitum (AL) control condition in nonobese humans. We performed exploratory analyses of muscle mitochondrial DNA (mtDNA) integrity, one element of mitochondrial quality. Our aims were to assess the feasibility of this approach, explore associations to...
Alzheimer’s disease (AD) disproportionately affects women and carriers of the apolipoprotein E ε4 allele (APOE4), yet little is known about how sex and APOE interact to influence white matter (WM) integrity during disease progression. We integrated diffusion MRI and matched blood transcriptomic data to investigate these interactions and their underlying biological mechanisms. WM microstructure was quantified using diffusion te...
The East Portland Special Fishery Conservation Area (EPSFCA) is a no-take marine reserve in northeast Jamaica, established in 2016. The region is historically understudied and lacks ecological data critical for evaluating conservation outcomes. This study uses monitoring data collected with Global Coral Reef Monitoring Network methods to quantify changes in benthic, fish, and invertebrate communities from 2017 to 2024 and to e...
Determinants of riverine migration success by Atlantic salmon ( Salmo salar ) smolts from rivers across the UK and IrelandNARA Subscribed
There is some evidence that the river migration success of Atlantic salmon smolts, on their first migration to sea, varies both spatially and temporally. However, we have only a poor understanding of what may be driving this variation. In this study, we used acoustic telemetry to quantify the spatial and temporal variations in river migration success in Atlantic salmon smolts on their first migration to sea. In total 4120 Atla...
The migratory behavior of Atlantic salmon ( Salmo salar ) post‐smolts in coastal waters is poorly understood. In this collaborative study, 1914 smolts, from 25 rivers, in four countries were tagged with acoustic transmitters during a single seasonal migration. In total, 1105 post‐smolts entered the marine study areas and 438 (39.6%) were detected on a network of 414 marine acoustic receivers and an autonomous underwater vehicl...
Predicting the progression of MCI and Alzheimer’s disease on structural brain integrity and other features with machine learningNARA Subscribed
Machine learning (ML) on structural MRI data shows high potential for classifying Alzheimer’s disease (AD) progression, but the specific contribution of brain regions, demographics, and proteinopathy remains unclear. Using Alzheimer’s Disease Neuroimaging Initiative (ADNI) data, we applied an extreme gradient-boosting algorithm and SHAP (SHapley Additive exPlanations) values to classify cognitively normal (CN) older adults, th...
The fundamental goal of a rare plant translocation is to create self‐sustaining populations with the evolutionary resilience to persist in the long term. Yet, most plant translocation syntheses focus on a few factors influencing short‐term benchmarks of success (e.g., survival and reproduction). Short‐term benchmarks can be misleading when trying to infer future growth and viability because the factors that promote establishme...
The freshwater phase of the first seaward migration of juvenile Atlantic salmon ( Salmo salar ) is relatively well understood when compared with our understanding of the marine phase of their migration. In 2021, 1008 wild and 60 ranched Atlantic salmon smolts were tagged with acoustic transmitters in 12 rivers in England, Scotland, Northern Ireland and Ireland. Large marine receiver arrays were deployed in the Irish Sea at two...
Offshore platforms, subsea pipelines, wells and related fixed structures supporting the oil and gas (O&G) industry are prevalent in oceans across the globe, with many approaching the end of their operational life and requiring decommissioning. Although structures can possess high ecological diversity and productivity, information on how they interact with broader ecological processes remains unclear. Here, we review the curren...
Resurrection of Mesoplodon hotaula Deraniyagala 1963: A new species of beaked whale in the tropical Indo‐PacificNARA Subscribed
We present genetic and morphological evidence supporting the recognition of a previously synonymized species of Mesoplodon beaked whale in the tropical Indo‐Pacific, Mesoplodon hotaula . Although the new species is closely‐related to the rare ginkgo‐toothed beaked whale M. ginkgodens, we show that these two lineages can be differentiated by maternally (mitochondrial DNA ), biparentally (autosomal), and paternally (Y chromosome...
Historically, the range of the southern right whale ( SRW ) included winter calving grounds around the North and South Islands (mainland) of New Zealand ( NZ ) and in the NZ subantarctic Auckland and Campbell Islands. Due to extensive whaling in the 19th and 20th centuries, no SRW was seen around mainland NZ for nearly four decades (1928–1963). Here we present evidence for the regular use of the mainland NZ wintering ground, p...
Molecular analysis of the efficiency of sloughed skin sampling in whale population geneticsNARA Subscribed
Sloughed whale skin contains enough DNA for genetic analysis, and offers a nonintrusive method for collecting tissue. Here, we examine the efficiency of sloughed skin sampling using 1460 samples collected from free‐ranging humpback whales. Samples were sexed and screened for up to 10 microsatellite markers. The vast majority of samples appear genetically compatible with field observations. About 1% of groups revealed more geno...
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