An eclectic set of tissues and existing data, including purposely collected samples, spanning 1997–2006, was used in an ad hoc assessment of hybridization and introgression of farmed wild Atlantic salmon Salmo salar in the small Loch na Thull ( LnT ) catchment in north‐west Scotland. The catchment is in an area of marine farm production and contains freshwater smolt rearing cages. The LnT S. salar stock was found to be genetic...

Morphological characters were compared between smolts (standard length 110–220 mm) of Atlantic salmon Salmo salar L., anadromous brown trout Salmo trutta L. and their hybrids captured in River Driva, western Norway. Morphological discrimination between S. salar, S. trutta and their hybrids was correct for 93% of the individuals (correct form was determined genetically). Morphological discrimination of hybrids was incorrect wit...

Variation in egg size, hatch timing and size at hatch, and their influence on individual growth rates of Atlantic salmon Salmo salar alevins up to first feeding were examined in pure strain and hybrid crosses of fish from Scotland and Canada. At the intra‐female, intra‐cross type and inter‐cross type levels, specific growth rates prior to first feed were strongly size dependent, with smaller and later hatching alevins growing...

There is increasing interest in the use of molecular genetic data to infer genealogical relationships among individuals in the absence of parental information. Such analyses can provide insight into mating systems and estimations of heritability in the wild. In addition, accurate pedigree reconstruction among the founders of endangered populations being reared in captivity would be invaluable. Many breeding programs for endang...

Atlantic salmon Salmo salar were followed from egg to smoltification using genetic analysis to identify individuals and to link observations from pre‐ and post first feeding. Egg size and hatch timing significantly influenced alevin size at first feed but neither egg size, hatch timing or alevin sizes were correlated to size, condition factor or smolt status post first feed. In a hatchery environment the potential advantage ga...

Genetic evidence for the selective exploitation by anglers of early running fish was examined in four Iberian Atlantic salmon populations using protein and mtDNA markers. The populations studied had been exploited exclusively by anglers since 1949 during a fixed fishing season that ran approximately from March to July. Genetic variation at six protein loci was small and was accounted for by the MEP‐2 * and MDH‐3,4 * polymorphi...

Allozyme variation was characterised by starch gel electrophoresis at 23 enzyme coding loci and one regulatory locus in Atlantic salmon from 53 rivers in Eastern Canada, encompassing the majority of the species' North American range. Variation among rivers was highly heterogeneous and eight of the 15 polymorphisms showed regionally restricted distributions. Nearest neighbour joining (NJ) analysis and multi‐dimensional scaling...

Allozyme markers were used to investigate the spatial boundaries of the non‐anadromous Atlantic salmon population of Little Gull Lake, Eastern Canada. Mixed year class samples of juvenile salmon were analysed from inlet streams, upstream lakes, the outlet river and sites downstream. No evidence was found that individuals from the Lake's non‐anadromous population were present in these samples, strongly suggesting that the non‐a...

Electrophoretic studies of proteins remain a primary source of insight into genetic diversity in many species including the Atlantic salmon Salmo salar , one of the most culturally and economically important fish species of the North Atlantic region. Since 1966, >350 scientific papers on protein variation have been published encompassing 25 000+ salmon from over 400 locations in >200 river systems across the species’ distribut...

Starch gel electrophoresis of the phosphoglucomutase isozyme, PGM‐1, in liver tissue in Atlantic salmon Salmo salar shows three phenotypes – full, partial and no expression. The genetic basis of the variation has not been established. Studies of the inheritance of the variation and of liver enzyme levels carried out indicate that the variation, as in rainbow trout Onchorynchus mykiss , reflects co‐dominant allelic variation at...

Previous studies of the ESTD * isozyme locus in the Atlantic salmon show the * 80 allele to be absent across the species’ European range, with the exception of northern Russia, whereas the allele is nearly fixed in North American populations. The allele was found in samples from 15 out of 18 rivers on the Kola Peninsula and White sea coast and had frequencies that ranged from 0·017 to 0·363. Typing of fish in nine of these riv...

Data on geographical variation in allele frequencies at enzyme coding loci in Atlantic salmon from the British Isles were collated from published and unpublished sources. Statistically significant differences in allele frequencies were found among samples both within and among river systems, suggesting that the Atlantic salmon in the British Isles is not a panmictic population and that even within major river systems it cannot...

Current understanding of the postglacial colonization of Nearctic and Palearctic species relies heavily on inferences drawn from the phylogeographic analysis of contemporary generic variants. Modern postglacial populations are supposed to be representative of their Pleistocene ancestors, and their current distribution is assumed to reflect the different colonization success and dispersal patterns of refugial lineages. Yet, tes...

PCR primers were successfully designed to amplify small ND1 gene fragments for RFLP genotyping of degraded Atlantic salmon Salmo salar mtDNA. Analysis of archival scales with these primers, when existing primer sets failed, show Atlantic salmon from the George River, Quebec, to include European haplotypes and those from the Kapisidlit River, West Greenland, to be fixed for a European haplotype characteristic of Baltic populati...

A previous analysis of proportions of stocked and wild Atlantic salmon among angled fish in the Rivers Asón and Nansa in northern Spain based on the analysis of MEP‐2 * genotypes is extended. The results reinforce the initial conclusion that returns of stocked Scottish salmon are significantly lower than returns for wild fish.

The effect of natural selection on the m MEP‐2 * locus on measures of genetic divergence among Atlantic salmon populations was investigated by examining the pattern of change in the level of genetic differentiation (F ST ) averaged over loci when data on the m MEP‐2 * locus were either included or excluded. The level of F ST among populations at various geographic scales was estimated from allele frequencies at up to four loci...

The distribution of genetic variation for NAD+ malic enzyme ( ME* ) polymorphism in the Atlantic salmon was assessed in both anadromous and resident populations. The analysis revealed a major allelic divergence between North America and Europe. The *80 variant occurred in 39 of 40 North American samples, ranging in frequency from 0 to 0.515. In contrast, it was detected in only three fish from two of the 35 European locations...

Atlantic salmon eggs from the Rivers Oykel and Shin were monitored in three rivers and in culture. Significant mortality, attributable to low pH, was found for both stocks in the River Oykel though it was eightfold higher for the non‐native Shin eggs. Shin eggs hatched earlier at all three wild sites but hatched later in culture. The observations are consistent with genotype‐environment interactions for pH sensitivity and deve...