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Standardized microhaplotype databases and frameworks for assessing and mining crop genetic diversityNARA Subscribed
Keymessage Standardized microhaplotype databases for eight diverse crops enable multiallelic analyses, comparative genetics, and breeding decisions. Abstract Microhaplotypes are short genomic segments that contain multiple tightly linked variants, providing multi-allelic data that can enhance genetic resolution compared to traditional biallelic single nucleotide polymorphism (SNP) markers. Here, we present the creation and uti...
Aim We investigate the distribution of dispersal modes — endozoochory (via animal ingestion), synzoochory (via animal seed accumulation) and anemochory (via wind)—and seed mass of woody plants across Brazilian ecosystems, testing whether their relative abundance in local plant communities could be predicted by climate, edaphic factors and dispersal agents (e.g., the main vectors moving seeds). We expected climate to be the mai...
A primary care pharmacogenetic precision medicine pilot based on specific Māori tribal ethical frameworks and principlesNARA Subscribed
Indigenous tribal communities are frequently underserved by genomic medicine because they are under-represented in research, often live in remote locations and have ethical and cultural perspectives that vary from westernised standpoints. The Rakeiora platform, a permissioning and analytical environment that incorporates Māori perspectives and ethical frameworks on how precision medicine research is best conducted was used to...
Stratigraphic evidence of organic carbon depletion in an intensely trawled muddy seabedNARA Subscribed
Understanding the long-term effects of bottom trawling on sedimentary organic carbon (OC) is crucial for assessing its role in carbon cycling and climate regulation. Most studies analyse effects on surface sediments (≤10 cm), leaving impacts on deeper sediments poorly resolved. This study investigates how bottom trawling influences sediment OC density (SCD) and OC content within 0–50 cm of the Western Irish Sea Mud Belt, repre...
Interpretable deep learning reveals spatiotemporal MRI features of brain aging that align with neurodegenerationNARA Subscribed
Cortical thinning and atrophy are hallmarks of brain aging that have been characterized using magnetic resonance imaging (MRI). Brain aging involves many neuroanatomic features whose effects on brain structure remain unexplored. To address this challenge, we trained interpretable deep neural networks (DNNs) to estimate brain age (BA) from T 1 -weighted ( T 1 w) MRI. By identifying MRI features unapparent to humans, DNNs can fi...
Environmental Variability Shapes Life‐History Trade‐Offs Within and Between Populations of a Long‐Lived SeabirdNARA Subscribed
Individuals face a trade‐off between allocating resources to reproduction or self‐maintenance, yet the drivers of the existence and strength of such trade‐off have been hard to determine. Environmental conditions are thought to play a crucial role, as long‐lived species are predicted to favour more precautionary life‐history strategies in variable environments. However, empirical evidence remains limited. Using long‐term monit...
Introduction Picocyanobacteria from the genera Prochlorococcus and Synechococcus thrive across the globe in aquatic environments, have relatively small genomes, and have growth dynamics regulated by both viral interactions and abiotic conditions, making them excellent model organisms for exploring host-pathogencoevolution. Methods We developed and refined methods to sample and sequence cyanobacteria, cyanophages, and measured...
Alzheimer’s disease (AD) disproportionately affects women and carriers of the apolipoprotein E ε4 allele (APOE4), yet little is known about how sex and APOE interact to influence white matter (WM) integrity during disease progression. We integrated diffusion MRI and matched blood transcriptomic data to investigate these interactions and their underlying biological mechanisms. WM microstructure was quantified using diffusion te...
Evaluation of native macroalgae species of the Southeast U.S. and Caribbean for use in integrated multi-trophic aquaculture (IMTA)NARA Subscribed
This study assessed the comparative performance of candidate marine macroalgae species under integrated multi-trophic aquaculture (IMTA) culture conditions in a system culturing yellowtail snapper ( Ocyurus chrysurus ) at a commercial-scale biomass density. The nutrient-rich effluent water from the marine finfish culture tank supplied replicated macroalgae raceways containing four candidate species of macroalgae ( Agardhiella...