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Climate change threatens biodiversity when species cannot tolerate, adapt to, or track shifting environmental conditions to stay within their climatic niches. A major unresolved question is whether and how species' genetic diversity modulates these dynamics, buffering against range contractions or facilitating range expansions. To test this, we integrated the largest global databases of species range shifts and genetic diversi...
Combined resistance mechanisms leading to high-level of cefiderocol resistance among NDM-like producing E. coli ST167 clinical isolatesNARA Subscribed
Summary Purpose A series of NDM-producing Escherichia coli ST167 clinical isolates exhibiting resistance to cefiderocol (FDC), with no previous exposure to this antibiotic, were analyzed in this study. Methods The antimicrobial susceptibility testing and phenotypic detection of resistance patterns (Rapid Cefiderocol NP test and MIC determination) were performed for all tested isolates. Their entire genomes were sequenced by us...
Motivation Here, we make available a second version of the BioTIME database, which compiles records of abundance estimates for species in sample events of ecological assemblages through time. The updated version expands version 1.0 of the database by doubling the number of studies and includes substantial additional curation to the taxonomic accuracy of the records, as well as the metadata. Moreover, we now provide an R packag...
Emerging infectious diseases (EIDs) not only cause catastrophic declines in wildlife populations but also generate selective pressures that may result in rapid evolutionary responses. One such EID is devil facial tumour disease (DFTD) in the Tasmanian devil. DFTD is almost always fatal and has reduced the average lifespan of individuals by around 2 years, likely causing strong selection for traits that reduce susceptibility to...
Intensive professional vehicle-based shooting provides local control of invasive rusa deer in a peri-urban landscapeNARA Subscribed
Non-native deer are becoming increasingly common in peri-urban landscapes, where they pose a risk to the health and wellbeing of people. Professional vehicle-based shooting is commonly used to control deer populations in these complex landscapes, but the effectiveness and cost of this method have seldom been evaluated. We analyzed the effectiveness and cost of using professional vehicle-based shooting to reduce the abundance a...
Bringing traits back into the equation: A roadmap to understand species redistributionNARA Subscribed
Ecological and evolutionary theories have proposed that species traits should be important in mediating species responses to contemporary climate change; yet, empirical evidence has so far provided mixed evidence for the role of behavioral, life history, or ecological characteristics in facilitating or hindering species range shifts. As such, the utility of trait‐based approaches to predict species redistribution under climate...
Molecular analysis of metallo-beta-lactamase-producing Pseudomonas aeruginosa in Switzerland 2022–2023NARA Subscribed
Objectives The occurrence of metallo-beta-lactamase-producing Pseudomonas aeruginosa (MBL-PA) isolates is increasing globally, including in Switzerland. The aim of this study was to characterise, phenotypically and genotypically, the MBL-PA isolates submitted to the Swiss National Reference Center for Emerging Antibiotic Resistance (NARA) reference laboratory over a 12-month period from July 2022 to July 2023. Methods Thirty-n...
The occurrence of facultative endosymbionts has been studied in many commercially important crop pest aphids, but their occurrence and effects in non‐commercial aphid species in natural populations have received less attention. We screened 437 aphid samples belonging to 106 aphid species for the eight most common facultative aphid endosymbionts. We found one or more facultative endosymbionts in 53% (56 of 106) of the species i...
Understanding temporal variability across trophic levels and spatial scales in freshwater ecosystemsNARA Subscribed
A tenet of ecology is that temporal variability in ecological structure and processes tends to decrease with increasing spatial scales (from locales to regions) and levels of biological organization (from populations to communities). However, patterns in temporal variability across trophic levels and the mechanisms that produce them remain poorly understood. Here we analyzed the abundance time series of spatially structured co...
XLKarst, an Excel tool for time series analysis, spring recession curve analysis and classification of karst aquifersNARA Subscribed
Karst aquifers are complex hydrogeological systems that require numerous in-situ measurements of hydrological and physico-chemical parameters to characterize transfer processes from the recharge area to the karst spring. Numerous graphical, statistical or signal processing methods have been developed for decades to interpret these measurements, but there is no simple and standardized tool that can be used for this purpose, whi...
Large‐effect loci affect survival in Tasmanian devils ( Sarcophilus harrisii ) infected with a transmissible cancerNARA Subscribed
Identifying the genetic architecture of complex phenotypes is a central goal of modern biology, particularly for disease‐related traits. Genome‐wide association methods are a classical approach for identifying the genomic basis of variation in disease phenotypes, but such analyses are particularly challenging in natural populations due to sample size difficulties. Extensive mark–recapture data, strong linkage disequilibrium an...
A strong-motion database from the Peru–Chile subduction zoneNARA Subscribed
Seasonal variations of phage life strategies and bacterial physiological states in three northern temperate lakesNARA Subscribed
Summary The current consensus concerning the prevalence of lytic and lysogenic phage life cycles in aquatic systems is that the host physiological state may influence viral strategies, lysogeny being favoured when hosts have reduced metabolic rates. We explored this hypothesis, by following phage cycle dynamics, host physiological state and metabolic activity over an annual cycle in three lakes subjected to strong seasonal flu...
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