J. Neely results 34
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Assessment of antibiotic resistance genes in Caribbean corals, including those treated with amoxicillinNARA Subscribed
The decimation of reefs from stony coral tissue loss disease prompted the use of a topical amoxicillin treatment to prevent coral mortality. Application of this treatment led to concerns about unintentional impacts such as potential alteration of the coral microbiome and possible spread of antibiotic resistance. We used three different methodologies—microbial RNA sequencing, 16S rRNA amplicon surveys, and microbial qPCR array—...
The unprecedented mortality to Caribbean corals caused by stony coral tissue loss disease (SCTLD) led to the use of an in-water medicine applied directly to disease lesions. This topical amoxicillin paste is highly effective in halting lesions and has been used on tens of thousands of wild corals since 2019, but long-term survival rates of treated corals as well as the frequency of potential reinfections remained speculative....
Arthropod declines have been reported widely; however, a lack of comprehensive data has hindered our ability to assess their large‐scale generality and drivers. Here, we used a novel and freely available dataset—atmospheric scans from a network of meteorological radars—to quantify aerial abundance of both diurnal and nocturnal arthropods across the United Kingdom, spanning different geographic regions and land cover types. Bas...
Reference genomes from representative species across families provide the critical infrastructure for research and conservation. The Cetacean Genomes Project (CGP) began in early 2020 to facilitate the generation of near error-free, chromosome-resolved reference genomes for all cetacean species. Towards that goal, and using the methods, goals and genome assembly quality standards of the Vertebrate Genomes Project (VGP), we gen...
Experimental Drought Suppresses Amphibian Pathogen Yet Intensifies Transmission and Disrupts Protective Skin MicrobiomeNARA Subscribed
Shifting precipitation regimes driven by global climate change can alter vertebrate behavior and host‐symbiont relationships, potentially compromising host resistance to pathogen invasion. In Brazil's Atlantic Forest, a biodiversity hotspot, prior research identified drought as a key factor disrupting the skin microbiome, contributing to a die‐off of pumpkin toadlets due to the invasive waterborne fungal pathogen Batrachochytr...
The summer 2023 marine heatwave was the most severe on record for Florida’s Coral Reef, with unprecedented water temperatures and cumulative heat stress leading to 100% coral bleaching. An existing fate-tracking program of over 4200 brain and boulder coral colonies across five offshore and four inshore reefs allowed for analyses of bleaching-related mortality and diseases through the event. Across the vast majority of assessed...
Leaf Shelters Facilitate the Colonisation of Arthropods and Enhance Microbial Diversity on PlantsNARA Subscribed
Shelter‐building insects are important ecosystem engineers, playing critical roles in structuring arthropod communities. Nonetheless, the influence of leaf shelters and arthropods on plant–associated microbiota remains largely unexplored. Arthropods that visit or inhabit plants can contribute to the leaf microbial community, resulting in significant changes in plant–microbe interactions. By artificially constructing leaf shelt...
Alcohol ethoxylates (AEs) are a well-known class of non-ionic surfactants widely used by the personal care market. The aim of this study was to evaluate and characterize the in vitro metabolism of AEs and identify metabolites. Five selected individual homologue AEs (C 8 EO 4 , C 10 EO 5 , C 12 EO 4 , C 16 EO 8 , and C 18 EO 3 ) were incubated using human, rat, and hamster liver S9 fraction and cryopreserved hepatocytes. LC–MS...
Stony coral tissue loss disease (SCTLD) has spread throughout the entirety of Florida’s Coral Reef (FCR) and across the Caribbean, impacting at least 30 coral species. The threatened hermatypic coral, Orbicella faveolata , demonstrates intraspecific variation in SCTLD affectedness with some colonies experiencing chronic disease lesions, while other nearby O. faveolata colonies appear unaffected with no disease signs over long...
The onset of global climate change has led to abnormal rainfall patterns, disrupting associations between wildlife and their symbiotic microorganisms. We monitored a population of pumpkin toadlets and their skin bacteria in the Brazilian Atlantic Forest during a drought. Given the recognized ability of some amphibian skin bacteria to inhibit the widespread fungal pathogen Batrachochytrium dendrobatidis (Bd), we investigated li...
A proof of concept reinforcement learning based tool for non parametric population pharmacokinetics workflow optimizationNARA Subscribed
The building of population pharmacokinetic models can be described as an iterative process in which given a model and a dataset, the pharmacometrician introduces some changes to the model specification, then perform an evaluation and based on the predictions obtained performs further optimization. This process (perform an action, witness a result, optimize your knowledge) is a perfect scenario for the implementation of Reinfor...
Glycosylation and the global viromeNARA Subscribed
The sugars that coat the outsides of viruses and host cells are key to successful disease transmission, but they remain understudied compared to other molecular features. Understanding the comparative zoology of glycosylation ‐ and harnessing it for predictive science ‐ could help close the molecular gap in zoonotic risk assessment.
Diversification along a benthic to pelagic gradient contributes to fish diversity in the world's largest lake (Lake Baikal, Russia)NARA Subscribed
Insights into the generation of diversity in both plants and animals have relied heavily on studying speciation in adaptive radiations. Russia's Lake Baikal has facilitated a putative adaptive radiation of cottid fishes (sculpins), some of which are highly specialized to inhabit novel niches created by the lake's unique geology and ecology. Here, we test evolutionary relationships and novel morphological adaptation in a piece...
Phylogeography of the widespread creek chub Semotilus atromaculatus (Cypriniformes: Leuciscidae)NARA Subscribed
The extent and nature of genetic differentiation in Semotilus atromaculatus , one of the most abundant and widespread leuciscids in North America, were evaluated based on mitochondrial (mt) and nuclear DNA sequence variation. Phylogenetic relationships were first inferred based on a fragment of the cytochrome b ( cytb ) region and the nuclear intron s7 gene for S. atromaculatus and all other congeners as well as representative...