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Climate Attribution in Fishery Stock Assessment: Case Studies From the Northeast U.S. Groundfish StocksNARA Subscribed
Climate change poses an unprecedented risk to fisheries ecosystems and economies globally. Ocean warming has led to observed geographic shifts and changes in the productivity of fish stocks. Due to the rapid pace of change in many of the world's oceans, there is a critical need to develop and apply scientific knowledge and tools that can help account for non‐stationarity and integrate climate and ecosystem drivers into fishery...
The hyperiid amphipod Brachyscelus rapacoides is a warm-water species associated with gelatinous zooplankton. In the Mediterranean it has been reported in association with Rhopilema nomadica in both Israel and Turkey. Here, we document the first record of B. rapacoides in Greek waters, representing the first confirmed record for Europe, based on both morphological examination and DNA barcoding of the mitochondrial COI gene. Sp...
Interpretable deep learning reveals spatiotemporal MRI features of brain aging that align with neurodegenerationNARA Subscribed
Cortical thinning and atrophy are hallmarks of brain aging that have been characterized using magnetic resonance imaging (MRI). Brain aging involves many neuroanatomic features whose effects on brain structure remain unexplored. To address this challenge, we trained interpretable deep neural networks (DNNs) to estimate brain age (BA) from T 1 -weighted ( T 1 w) MRI. By identifying MRI features unapparent to humans, DNNs can fi...
Alzheimer’s disease (AD) disproportionately affects women and carriers of the apolipoprotein E ε4 allele (APOE4), yet little is known about how sex and APOE interact to influence white matter (WM) integrity during disease progression. We integrated diffusion MRI and matched blood transcriptomic data to investigate these interactions and their underlying biological mechanisms. WM microstructure was quantified using diffusion te...
Waterfowl Move Less in Heterogeneous and Human‐Populated Landscapes, With Implications for Spread of Avian Influenza VirusesNARA Subscribed
Animal movements contribute to the spread of infectious diseases and are driven in part by environmental conditions. We investigated the links among the environment, animal movement, and infectious disease dynamics in waterfowl, which are among the primary wildlife hosts of avian influenza viruses. By combining telemetry data on 4606 individuals from 26 waterfowl species with data on land cover, weather, and vegetation, we fou...
Predicting the progression of MCI and Alzheimer’s disease on structural brain integrity and other features with machine learningNARA Subscribed
Machine learning (ML) on structural MRI data shows high potential for classifying Alzheimer’s disease (AD) progression, but the specific contribution of brain regions, demographics, and proteinopathy remains unclear. Using Alzheimer’s Disease Neuroimaging Initiative (ADNI) data, we applied an extreme gradient-boosting algorithm and SHAP (SHapley Additive exPlanations) values to classify cognitively normal (CN) older adults, th...
Purpose The effects of low-intensity exercise, heat-induced hypo-hydration and rehydration on maximal strength and the underlying neurophysiological mechanisms are not well understood. Methods To assess this, 12 participants took part in a randomised crossover study, in a prolonged (3 h) submaximal (60 W) cycling protocol under 3 conditions: (i) in 45 °C (achieving ~ 5% body mass reduction), with post-exercise rehydration in 2...
Biotic and abiotic drivers of harbor seal ( Phoca vitulina ) fine‐scale densities in the Salish SeaNARA Subscribed
Understanding relationships between environmental characteristics and variation in species occurrence and density can provide information for managing human activities, protected species, and species of commercial importance in a dynamic system. To identify environmental drivers associated with variation in harbor seal ( Phoca vitulina ) densities in the Salish Sea, Washington, we analyzed 20 years of boat‐based survey data an...
The performance of herbivorous animals depends on the nutritional and defensive traits of the plants they consume. The uptake and deposition of biogenic silicon in plant tissues is arguably the most basic and ubiquitous anti‐herbivore defence used by plants, especially grasses. We conducted meta‐analyses of 150 studies reporting how vertebrate and invertebrate herbivores performed when feeding on silicon‐rich plants relative t...
A global assessment of environmental and climate influences on wetland macroinvertebrate community structure and functionNARA Subscribed
Estimating organisms' responses to environmental variables and taxon associations across broad spatial scales is vital for predicting their responses to climate change. Macroinvertebrates play a major role in wetland processes, but studies simultaneously exploring both community structure and community trait responses to environmental gradients are still lacking. We compiled a global dataset (six continents) from 756 depressio...
This study provides a regional picture of long‐term changes in Atlantic salmon growth at the southern edge of their distribution, using a multi‐population approach spanning 49 years and five populations. We provide empirical evidence of salmon life history being influenced by a combination of common signals in the marine environment and population‐specific signals. We identified an abrupt decline in growth from 1976 and a more...
Practical Guide to Measuring Wetland Carbon Pools and FluxesNARA Subscribed
Wetlands cover a small portion of the world, but have disproportionate influence on global carbon (C) sequestration, carbon dioxide and methane emissions, and aquatic C fluxes. However, the underlying biogeochemical processes that affect wetland C pools and fluxes are complex and dynamic, making measurements of wetland C challenging. Over decades of research, many observational, experimental, and analytical approaches have bee...
A structure-based gamma evaluation method for identifying clinically relevant dose differences in organs at riskNARA Subscribed
Gamma evaluation is currently the most widely used dose comparison method for patient specific quality assurance (PSQA). However, existing methods for normalising the dose difference, using either the dose at the global maximum dose point or at each local point, can respectively lead to under- and over-sensitivity to dose differences in organ-at-risk structures. This may be of concern for plan evaluation from clinical perspect...