Jared Ali results 32
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Salinity impacts biocontrol: a tri-trophic assessment of the effects of soil salinity on plant signaling and parasitoid fitnessNARA Subscribed
Soil salinization and insect herbivory pose significant threats to global food security. While biocontrol agents like parasitoid wasps are a key pest management strategy, their efficacy may be compromised by abiotic stressors cascading through trophic levels. This study investigates the tri-trophic interactions among tomato plants ( Solanum lycopersicum ), the caterpillar pest Helicoverpa zea , and its specialist endoparasitoi...
The increasing salinization of agricultural land is a pressing problem, altering how plants interact with organisms across multiple trophic levels. While salinity-induced changes in plant chemistry are known to affect insect herbivores, it remains unclear how these changes shape predator responses. Here, we examined how prey quality (tomato fruitworm caterpillars— Helicoverpa zea ), shaped by soil salinity influences the forag...
Interpretable deep learning reveals spatiotemporal MRI features of brain aging that align with neurodegenerationNARA Subscribed
Cortical thinning and atrophy are hallmarks of brain aging that have been characterized using magnetic resonance imaging (MRI). Brain aging involves many neuroanatomic features whose effects on brain structure remain unexplored. To address this challenge, we trained interpretable deep neural networks (DNNs) to estimate brain age (BA) from T 1 -weighted ( T 1 w) MRI. By identifying MRI features unapparent to humans, DNNs can fi...
Alzheimer’s disease (AD) disproportionately affects women and carriers of the apolipoprotein E ε4 allele (APOE4), yet little is known about how sex and APOE interact to influence white matter (WM) integrity during disease progression. We integrated diffusion MRI and matched blood transcriptomic data to investigate these interactions and their underlying biological mechanisms. WM microstructure was quantified using diffusion te...
Volatilized Metabolites Produced by Soilborne Aspergillus flavus Regulate Fungal Conidiation, and Production of Secondary MetabolitesNARA Subscribed
Corn plants are susceptible to infection by fungi such as Aspergillus flavus that have the potential to produce several types of mycotoxins, one of the most potent ones known to exist is aflatoxin. Since aflatoxin contaminated corn must be destroyed, causing annual monetary losses in billions of dollars, it would be helpful to detect the presence of aflatoxin producing fungi at pre-harvest and pre-planting stages. To this end,...
The domestication of crops leads to profound changes on plant phenotypes, yet its effects on floral traits mediating plant-pollinator interactions remain poorly understood. Floral volatile organic compounds (VOCs) play a crucial role in pollinator attraction by signaling the presence and quality of available floral resources. Here, we characterize VOC composition in Cucurbita , a genus containing multiple wild and domesticated...
Suppression of Belowground Volatiles in Maize Depends on Cover Crop Legacy and GenotypeNARA Subscribed
Volatile organic compounds are important chemical signals involved in plant-insect interactions. In recent decades, volatiles have been used in many agricultural applications to help control crop pests, but fewer applications have been developed for belowground pests despite volatile signaling and olfactory cues being crucial for orientation and communication of belowground organisms. Volatile signals also depend heavily on so...
Predicting the progression of MCI and Alzheimer’s disease on structural brain integrity and other features with machine learningNARA Subscribed
Machine learning (ML) on structural MRI data shows high potential for classifying Alzheimer’s disease (AD) progression, but the specific contribution of brain regions, demographics, and proteinopathy remains unclear. Using Alzheimer’s Disease Neuroimaging Initiative (ADNI) data, we applied an extreme gradient-boosting algorithm and SHAP (SHapley Additive exPlanations) values to classify cognitively normal (CN) older adults, th...
Evaluating expert‐based habitat suitability information of terrestrial mammals with GPS‐ tracking dataNARA Subscribed
Aim Macroecological studies that require habitat suitability data for many species often derive this information from expert opinion. However, expert‐based information is inherently subjective and thus prone to errors. The increasing availability of GPS tracking data offers opportunities to evaluate and supplement expert‐based information with detailed empirical evidence. Here, we compared expert‐based habitat suitability info...
Functional traits offer a rich quantitative framework for developing and testing theories in evolutionary biology, ecology and ecosystem science. However, the potential of functional traits to drive theoretical advances and refine models of global change can only be fully realised when species‐level information is complete. Here we present the AVONET dataset containing comprehensive functional trait data for all birds, includi...
Chemical cues play important roles in predator–prey interactions. Semiochemicals can aid predator foraging and alert prey organisms to the presence of predators. Previous work suggests that predator traits differentially influence prey behavior, however, empirical data on how prey organisms respond to chemical cues from predator species with different hunting strategies, and how foraging predators react to cues from potential...
Accurately quantifying species’ area requirements is a prerequisite for effective area‐based conservation. This typically involves collecting tracking data on species of interest and then conducting home‐range analyses. Problematically, autocorrelation in tracking data can result in space needs being severely underestimated. Based on the previous work, we hypothesized the magnitude of underestimation varies with body mass, a r...
Generalising indirect defence and resistance of plantsNARA Subscribed
Indirect defence, the adaptive top‐down control of herbivores by plant traits that enhance predation, is a central component of plant–herbivore interactions. However, the scope of interactions that comprise indirect defence and associated ecological and evolutionary processes has not been clearly defined. We argue that the range of plant traits that mediate indirect defence is much greater than previously thought, and we furth...