Kenneth Timmis results 49
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The Pareto principle, or 20:80 rule, describes resource distribution in stable communities whereby 20% of community members acquire 80% of a key resource. In this Burning Question, we ask to what extent the Pareto principle applies to the acquisition of limiting resources in stable microbial communities; how it may contribute to our understanding of microbial interactions, microbial community exploration of evolutionary space,...
Coupled C, H, N, S and Fe biogeochemical cycles operating in the continental deep subsurface of the Iberian Pyrite BeltNARA Subscribed
Microbial activity is a major contributor to the biogeochemical cycles that make up the life support system of planet Earth. A 613 m deep geomicrobiological perforation and a systematic multi‐analytical characterization revealed an unexpected diversity associated with the rock matrix microbiome that operates in the subsurface of the Iberian Pyrite Belt (IPB). Members of 1 class and 16 genera were deemed the most representative...
Environmental Microbiology is 25!NARA Subscribed
Bacterial tRNA landscape revisitedNARA Subscribed
Summary The updated Wobble Hypothesis reasonably explains why some 40 tRNA species are sufficient to decode the 61 amino acid codons of the Universal Genetic Code. However, we still have no clue why eubacteria lack tRNA isoacceptors with ANN anticodons, whereas eukaryotes universally lack eight GNN anticodons, only one of which is also absent in bacteria. Direct tRNA sequencing could resolve the patterns of nucleoside modifica...
COVID ‐19: long covid and its societal consequencesNARA Subscribed
Summary COVID‐19 is an acute, highly transmissible respiratory infection that is potentially lethal, but often mild, sometimes asymptomatic, especially in the young. However, it has become clear that, in some patients, there may be sequelae involving tissues other than the lung, resulting in other types of morbidity, and sometimes longer term consequences that are often termed ‘long covid’. In this Lilliput, we summarize recen...
SARS‐CoV ‐2 biology and variants: anticipation of viral evolution and what needs to be doneNARA Subscribed
Summary The global propagation of SARS‐CoV‐2 and the detection of a large number of variants, some of which have replaced the original clade to become dominant, underscores the fact that the virus is actively exploring its evolutionary space. The longer high levels of viral multiplication occur – permitted by high levels of transmission –, the more the virus can adapt to the human host and find ways to success. The third wave...
Summary Imposition of restrictions on civil liberties in response to epi/pandemic crises provokes collateral health, economic and social crises. Moreover, as a result of the societal distress engendered, they become less effective over time, reflected in reducing acceptability, public protests, lack of compliance and civil disobedience, as evidenced by current events in some countries. There is an urgent need to evolve new con...
SARS‐CoV ‐2 variants: Relevance for symptom granularity, epidemiology, immunity (herd, vaccines), virus origin and containment?NARA Subscribed
Summary The origin of the SARS‐CoV‐2 virus remains enigmatic. It is likely to be a continuum resulting from inevitable mutations and recombination events. These genetic changes keep developing in the present epidemic. Mutations tending to deplete the genome in its cytosine content will progressively lead to attenuation as a consequence of Muller's ratchet, but this is counteracted by recombination when different mutants co‐inf...
The current SARS‐CoV‐2 pandemic is wreaking havoc throughout the world and has rapidly become a global health emergency. A central question concerning COVID‐19 is why some individuals become sick and others not. Many have pointed already at variation in risk factors between individuals. However, the variable outcome of SARS‐CoV‐2 infections may, at least in part, be due also to differences between the viral subspecies with whi...
Environmental Microbiology is 20!NARA Subscribed
Multiplication of microbes below 0.690 water activity: implications for terrestrial and extraterrestrial lifeNARA Subscribed
Summary Since a key requirement of known life forms is available water (water activity; a w ), recent searches for signatures of past life in terrestrial and extraterrestrial environments have targeted places known to have contained significant quantities of biologically available water. However, early life on E arth inhabited high‐salt environments, suggesting an ability to withstand low water‐activity. The lower limit of wat...
Summary Countries of S outhern E urope are currently suffering from severe socio‐economic pain resulting from high debt levels and austerity measures which constrain investment in innovation‐based recovery strategies that are essential for entry into a long‐term sustainable period of increasing employment and wealth creation. Young university‐educated people are particularly innovative, and hence vital to the development of su...
Impact of a simulated oil spill on benthic phototrophs and nitrogen‐fixing bacteria in mudflat mesocosmsNARA Subscribed
Summary Coastal and estuarine ecosystems are highly susceptible to crude oil pollution. Therefore, in order to examine the resilience of benthic phototrophs that are pivotal to coastal ecosystem functioning, we simulated an oil spill in tidal mesocosms consisting of intact sediment cores from a mudflat at the mouth of the C olne E stuary, UK . At day 21, fluorescence imaging revealed a bloom of cyanobacteria on the surface of...
Halophilic archaea in the human intestinal mucosaNARA Subscribed
Summary The human gastrointestinal tract microbiota, despite its key roles in health and disease, remains a diverse, variable and poorly understood entity. Current surveys reveal a multitude of undefined bacterial taxa and a low diversity of methanogenic archaea. In an analysis of the microbiota in colonic mucosal biopsies from patients with inflammatory bowel disease we found 16S rDNA sequences representing a phylogenetically...
Consortia modulation of the stress response: proteomic analysis of single strain versus mixed cultureNARA Subscribed
Summary The high complexity of naturally occurring microbial communities is the major drawback limiting the study of these important biological systems. In this study, a comparison between pure cultures of Pseudomonas reinekei sp. strain MT1 and stable community cultures composed of MT1 plus the addition of Achromobacter xylosoxidans strain MT3 (in a steady‐state proportion 9:1) was used as a model system to study bacterial in...
Characterization of marine isoprene‐degrading communitiesNARA Subscribed
Summary Isoprene is a volatile and climate‐altering hydrocarbon with an atmospheric concentration similar to that of methane. It is well established that marine algae produce isoprene; however, until now there was no specific information about marine isoprene sinks. Here we demonstrate isoprene consumption in samples from temperate and tropical marine and coastal environments, and furthermore show that the most rapid degradati...
‘ Candidatus Lumbricincola’, a novel lineage of uncultured Mollicutes from earthworms of family LumbricidaeNARA Subscribed
Summary Molecular signatures of new, as yet uncultured mollicute‐like organisms (MLOs) have been detected in total rRNA and DNA extracted from tissues, gut contents and casts of four species of the earthworm family Lumbricidae. The MLO 16S rRNA sequences exhibited low identity to those of known Mollicutes species and formed a monophyletic cluster distantly affiliated to the ‘ Candidatus Bacilloplasma’ (84.9%) and almost equidi...