Kim Handley results 11
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Sources of variation in community composition of the hindgut microbiota in two tropical Kyphosus speciesNARA Subscribed
Gut microbiota play a fundamental role in the nutrition of many vertebrate herbivores through foregut and hindgut fermentation of plant carbohydrates. Some species of marine herbivorous fishes contain moderate to high levels of short-chain fatty acids in the hindgut, indicating the importance of hindgut fermentation. Herbivorous fish hindgut microbiota are diverse and can vary with geographic location, but data on the scale of...
Estuarine microbial diversity and nitrogen cycling increase along sand–mud gradients independent of salinity and distanceNARA Subscribed
Summary Estuaries are depositional environments prone to terrigenous mud sedimentation. While macrofaunal diversity and nitrogen retention are greatly affected by changes in sedimentary mud content, its impact on prokaryotic diversity and nitrogen cycling activity remains understudied. We characterized the composition of estuarine tidal flat prokaryotic communities spanning a habitat range from sandy to muddy sediments, while...
Summary Bacteria of the phylum Verrucomicrobia are ubiquitous in marine environments and can be found as free‐living organisms or as symbionts of eukaryotic hosts. Little is known about host‐associated Verrucomicrobia in the marine environment. Here we reconstructed two genomes of symbiotic Verrucomicrobia from bacterial metagenomes derived from the Atlanto‐Mediterranean sponge Petrosia ficiformis and three genomes from strain...
Following Rapoport's Rule: the geographic range and genome size of bacterial taxa decline at warmer latitudesNARA Subscribed
Summary We sought to test whether stream bacterial communities conform to Rapoport's Rule, a pattern commonly observed for plants and animals whereby taxa exhibit decreased latitudinal range sizes closer to the equator. Using a DNA sequencing approach, we explored the biogeography of biofilm bacterial communities in 204 streams across a ∼1000 km latitudinal gradient. The range sizes of bacterial taxa were strongly correlated w...
Disturbed subsurface microbial communities follow equivalent trajectories despite different structural starting pointsNARA Subscribed
Summary Microbial community structure, and niche and neutral processes can all influence response to disturbance. Here, we provide experimental evidence for niche versus neutral and founding community effects during a bioremediation‐related organic carbon disturbance. Subsurface sediment, partitioned into 22 flow‐through columns, was stimulated in situ by the addition of acetate as a carbon and electron donor source. This drov...
Summary We reconstructed the complete 2.4 Mb‐long genome of a previously uncultivated epsilonproteobacterium, C andidatus Sulfuricurvum sp. RIFRC ‐1, via assembly of short‐read shotgun metagenomic data using a complexity reduction approach. Genome‐based comparisons indicate the bacterium is a novel species within the S ulfuricurvum genus, which contains one cultivated representative, S . kujiense . Divergence between the speci...
Redox cycling of arsenic by the hydrothermal marine bacterium Marinobacter santoriniensisNARA Subscribed
Summary Marinobacter santoriniensis NKSG1 T is a mesophilic, dissimilatory arsenate‐reducing and arsenite‐oxidizing bacterium isolated from an arsenate‐reducing enrichment culture. The inoculum was obtained from arsenic‐rich shallow marine hydrothermal sediment from Santorini, Greece, with evidence of arsenic redox cycling. Growth studies demonstrated M. santoriniensis NKSG1 T is capable of conserving energy from the reduction...
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