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Diversity and functional group composition drive biogeographic patterns in marine biogenic structural complexityNARA Subscribed
Biogenic structural complexity is a key driver of biodiversity and ecosystem functioning, yet its ecological and environmental determinants remain poorly understood across broad biogeographic scales. Here, we conducted standardized 90‐day field experiments at 16 coastal sites, spanning a 41‐degree latitudinal gradient, using naturally assembled marine fouling communities on settlement panels. We measured rugosity as our metric...
Interpretable deep learning reveals spatiotemporal MRI features of brain aging that align with neurodegenerationNARA Subscribed
Cortical thinning and atrophy are hallmarks of brain aging that have been characterized using magnetic resonance imaging (MRI). Brain aging involves many neuroanatomic features whose effects on brain structure remain unexplored. To address this challenge, we trained interpretable deep neural networks (DNNs) to estimate brain age (BA) from T 1 -weighted ( T 1 w) MRI. By identifying MRI features unapparent to humans, DNNs can fi...
Alzheimer’s disease (AD) disproportionately affects women and carriers of the apolipoprotein E ε4 allele (APOE4), yet little is known about how sex and APOE interact to influence white matter (WM) integrity during disease progression. We integrated diffusion MRI and matched blood transcriptomic data to investigate these interactions and their underlying biological mechanisms. WM microstructure was quantified using diffusion te...
As climate change progresses and severe disturbances become routine, understanding rates and mechanisms of recovery in habitat-forming species is central to predicting the broader response of ecosystems to climate change. Here, we combined acute experimental heat stress and RNA sequencing to explore patterns of transcriptome plasticity and resilience to heat stress in a common Acropora coral from the World Heritage-listed Ning...
Transgenerational pathogen effects: Maternal pathogen exposure reduces offspring fitnessNARA Subscribed
Pathogens can alter the phenotype not only of exposed hosts, but also of future generations. Transgenerational immune priming, where parental infection drives reduced susceptibility of offspring, has been particularly well explored, but pathogens can also alter life history traits of offspring. Here, we examined the potential for transgenerational impacts of a microsporidian pathogen, Ordospora pajunii , by experimentally meas...
Motivation Here, we make available a second version of the BioTIME database, which compiles records of abundance estimates for species in sample events of ecological assemblages through time. The updated version expands version 1.0 of the database by doubling the number of studies and includes substantial additional curation to the taxonomic accuracy of the records, as well as the metadata. Moreover, we now provide an R packag...
Predicting the progression of MCI and Alzheimer’s disease on structural brain integrity and other features with machine learningNARA Subscribed
Machine learning (ML) on structural MRI data shows high potential for classifying Alzheimer’s disease (AD) progression, but the specific contribution of brain regions, demographics, and proteinopathy remains unclear. Using Alzheimer’s Disease Neuroimaging Initiative (ADNI) data, we applied an extreme gradient-boosting algorithm and SHAP (SHapley Additive exPlanations) values to classify cognitively normal (CN) older adults, th...
Seagrass wasting disease prevalence and lesion area increase with invertebrate grazing across the northeastern PacificNARA Subscribed
Disease is a key driver of community and ecosystem structure, especially when it strikes foundation species. In the widespread marine foundation species eelgrass ( Zostera marina ), outbreaks of wasting disease have caused large‐scale meadow collapse in the past, and the causative pathogen, Labyrinthula zosterae , is commonly found in meadows globally. Research to date has mainly focused on abiotic environmental drivers of sea...
A Latitudinal Cline in the Taxonomic Structure of Eelgrass Epifaunal Communities is Associated With Plant Genetic DiversityNARA Subscribed
Aim Biogenic structural complexity increases mobile animal richness and abundance at local, regional and global scales, yet animal taxa vary in their response to complexity. When these taxa also vary functionally, habitat structures favouring certain taxa may have consequences for ecosystem function. We characterised global patterns of epifaunal invertebrates in eelgrass ( Zostera marina ) beds that varied in structural and ge...
Primary progressive aphasia (PPA) and primary progressive apraxia of speech (PPAOS) are neurodegenerative syndromes characterized by progressive decline in language or speech. There is a growing number of studies investigating speech-language interventions for PPA/PPAOS. An updated systematic evaluation of the treatment evidence is warranted to inform best clinical practice and guide future treatment research. We systematicall...
Aim In northern environments, periods of isolation during Pleistocene glaciations and subsequent recolonization and secondary contact have had a significant influence on contemporary diversity of many species. The recent advent of high‐resolution genomic analyses allows unprecedented power to resolve genomic signatures of such events in northern species. Here, we provide the highest resolution genomic characterization of Atlan...
Genetic sex determination improves Canadian Atlantic salmon ( Salmo salar ) population assessmentsNARA Subscribed
Estimating egg deposition for Atlantic salmon population assessments is made difficult by their lack of sexual dimorphism prior to the autumn spawning season. We quantified the effect of sex misclassification from subjective examination of external morphology on egg deposition estimates in four Atlantic salmon populations across multiple years. Sex classification of Canadian salmon using the genetic sex marker ( sd Y) was accu...
Pacific cod in the Anthropocene: An early life history perspective under changing thermal habitatsNARA Subscribed
The rapid decline in Pacific cod ( Gadus macrocephalus , Gadidae) biomass following multiple Gulf of Alaska marine heatwaves (2014–2016 and 2019) may be one of the most dramatic documented changes in a sustainably managed marine fishery. As such, fisheries managers are exploring new recruitment paradigms for Pacific cod under novel environmental conditions. In this review, we address the challenges of managing and forecasting...
Whole‐genome sequencing reveals fine‐scale environment‐associated divergence near the range limits of a temperate reef fishNARA Subscribed
Environmental variation is increasingly recognized as an important driver of diversity in marine species despite the lack of physical barriers to dispersal and the presence of pelagic stages in many taxa. A robust understanding of the genomic and ecological processes involved in structuring populations is lacking for most marine species, often hindering management and conservation action. Cunner ( Tautogolabrus adspersus ) is...
Shifts in the composition and distribution of Pacific Arctic larval fish assemblages in response to rapid ecosystem changeNARA Subscribed
The Pacific Arctic marine ecosystem has undergone rapid changes in recent years due to ocean warming, sea ice loss, and increased northward transport of Pacific‐origin waters into the Arctic. These climate‐mediated changes have been linked to range shifts of juvenile and adult subarctic (boreal) and Arctic fish populations, though it is unclear whether distributional changes are also occurring during the early life stages. We...