Leptospira interrogans serovar Pomona infections cause periodic outbreaks in California sea lions (CSLs; Zalophus californianus ) and sporadic deaths in phocids. However, the frequency of infection and associated health impacts remain uncharacterized in sympatric threatened southern sea otters (SSOs; Enhydra lutris nereis ), which serve as important sentinels of coastal health. Given the broad impacts of L. interrogans on othe...

Background Circular agriculture promotes the reuse of organic waste, such as animal manures, to reduce reliance on synthetic fertilisers. However, manures can introduce veterinary pharmaceuticals into soils. Arbuscular mycorrhizal (AM) fungi are critical for plant nutrition, yet their responses to manure-associated pharmaceuticals remain poorly understood. We investigated the effects of three commonly used veterinary pharmaceu...

The Pecos pupfish, Cyprinodon pecosensis , is an imperilled freshwater fish found in arid regions of Texas and New Mexico (USA). The species faces multiple challenges to persistence including reductions in suitable habitat, water shortages, as well as hybridization and competition with an introduced congener (sheepshead minnow, C. variegatus ). As part of the current management strategy, refuge populations, seeded with non‐int...

Whole‐genome sequencing (WGS) has greatly expanded researchers' ability to study structural variants (SVs), that is, the variation in the presence, number, orientation or position of a DNA sequence. This has paved the way to study the eco‐evolutionary dynamics of SVs across the tree of life and within a population genomics framework. In this review, we provide the necessary fundamentals to help researchers generate and analyse...

A major goal of speciation research is identifying loci that underpin barriers to gene flow. Population genomics takes a ‘bottom‐up’ approach, scanning the genome for molecular signatures of processes that drive or maintain divergence. However, interpreting the ‘genomic landscape’ of speciation is complicated, because genome scans conflate multiple processes, most of which are not informative about gene flow. However, studying...

Our understanding of marine ecosystems and ability to manage them sustainably has come from multidisciplinary observations made repeatedly over long periods of time. These long‐term ecosystem observations depend on the capabilities of large research vessels, which play an essential role in the collection of global ocean observations. Research vessels serve as large, stable platforms for collecting high volume samples from the...

Plants play a key role in mediating soil response to global change, and breeding or engineering crops to increase soil organic carbon (SOC) storage is a potential route to land‐based carbon dioxide removal in agricultural systems. However, due to limited observational datasets plus shifting paradigms of SOC stabilization, it is unclear which plant traits are most important for enhancing different types of soil organic matter....

Marine protected areas (MPAs) are widely implemented tools for long‐term ocean conservation and resource management. Assessments of MPA performance have largely focused on specific ecosystems individually and have rarely evaluated performance across multiple ecosystems either in an individual MPA or across an MPA network. We evaluated the conservation performance of 59 MPAs in California's large MPA network, which encompasses...

Aim Long‐term monitoring data at the biogeographic scale are essential for developing baselines of biodiversity patterns and tools to diagnose natural cycles, trends, and anomalous events to assess threats from climate change. However, studies using these data often limit their analyses to relatively few metrics that may not adequately capture the breadth of biodiversity. Here, we calculate a suite of compositional and functio...

Forecasting the recruitment of fish populations with skill has been a challenge in fisheries for over a century. Previous large‐scale meta‐analyses have suggested linkages between environmental or ecosystem drivers and recruitment; however, applying this information in a management setting remains underutilized. Here, we use a well‐studied database of groundfish assessments from the West Coast of the USA to ask whether environ...

Habitat loss and fragmentation have caused declines in the abundance and distribution of butterflies, particularly habitat specialists. The Chequered Skipper, Carterocephalus palaemon , has been extinct in England since 1976 after declining from the 1940s predominantly due to changes in woodland management including afforestation and the decline in traditional coppice management. To enable C. palaemon to flourish again, this s...

Humans are perceived as predators by many species and may generate landscapes of fear, influencing spatiotemporal activity of wildlife. Additionally, wildlife might seek out human activity when faced with predation risks (human shield hypothesis). We used the anthropause, a decrease in human activity resulting from the COVID‐19 pandemic, to test ecology of fear and human shield hypotheses and quantify the effects of bear‐viewi...

Climate change and anthropogenic stressors affect the distribution, abundance, and diversity of fish communities across the world. To understand rapidly changing biotic communities, resource managers need a method to quickly and efficiently document temporal and spatial changes in community assemblages across various spatial scales. In this study, we describe the use of new video lander tools to survey fish communities in rock...