M. L. Mathias results 39
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Bioenergetic trophic trade‐offs determine mass‐dependent extinction thresholds across the CenozoicNARA Subscribed
Body size constrains trophic interactions, shaping the feasibility of species' populations. Over macroevolutionary timescales, these constraints feed back to shape selection on body size and diet. We develop a bioenergetic, three‐level trophic framework—typical of terrestrial mammalian ecosystems—to explore how bioenergetic trade‐offs emerging from predator–prey interactions constrain coexistence. We show that interactions amo...
The Rise (and Fall?) of European Water Shrews: Phylogeography and Species Distribution Models Uncover the Impact of Climate ChangeNARA Subscribed
Aim Predicting the effects of climate change on species distributions, while considering their genetic differentiation and evolutionary history is crucial to develop conservation measures. Here we aim to: assess the phylogenetic and phylogeographical relationships between the European Neomys species and respective lineages; infer the demographic history of all genetic lineages and estimate the potential impact of future climat...
Mixed effect estimation in deep compartment models: Variational methods outperform first-order approximationsNARA Subscribed
This work focusses on extending the deep compartment model (DCM) framework to the estimation of mixed-effects. By introducing random effects, model predictions can be personalized based on drug measurements, enabling the testing of different treatment schedules on an individual basis. The performance of classical first-order (FO and FOCE) and machine learning based variational inference (VI) algorithms were compared in a simul...
The reorganization of predator–prey networks over 20 million years explains extinction patterns of mammalian carnivoresNARA Subscribed
Linking the species interactions occurring at the scale of local communities to their potential impact at evolutionary timescales is challenging. Here, we used the high‐resolution fossil record of mammals from the Iberian Peninsula to reconstruct a timeseries of trophic networks spanning more than 20 million years and asked whether predator–prey interactions affected regional extinction patterns. We found that, despite small c...
Dominance of neotropical tree communities by a few species is widely documented, but dominant trees show a variety of distributional patterns still poorly understood. Here, we used 503 forest inventory plots (93,719 individuals ≥2.5 cm diameter, 2609 species) to explore the relationships between local abundance, regional frequency and spatial aggregation of dominant species in four main habitat types in western Amazonia. Altho...
Practical Guide to Measuring Wetland Carbon Pools and FluxesNARA Subscribed
Wetlands cover a small portion of the world, but have disproportionate influence on global carbon (C) sequestration, carbon dioxide and methane emissions, and aquatic C fluxes. However, the underlying biogeochemical processes that affect wetland C pools and fluxes are complex and dynamic, making measurements of wetland C challenging. Over decades of research, many observational, experimental, and analytical approaches have bee...
Closing the gap between science and management of cold‐water refuges in rivers and streamsNARA Subscribed
Human activities and climate change threaten coldwater organisms in freshwater ecosystems by causing rivers and streams to warm, increasing the intensity and frequency of warm temperature events, and reducing thermal heterogeneity. Cold‐water refuges are discrete patches of relatively cool water that are used by coldwater organisms for thermal relief and short‐term survival. Globally, cohesive management approaches are needed...
The use of fish dorsal muscles in stable isotope studies, which is an invasive method that results in fish deaths, limits their applicability for rare and endangered fish species, as well as when large sample sizes and replicates are required, prompting research into feasible non-lethal sampling methods. The possibility of employing fin clippings (a non invasive approach) was investigated as a proxy for dorsal muscle in nutrie...
Interlaboratory comparison of an intestinal triple culture to confirm transferability and reproducibilityNARA Subscribed
The development and improvement of advanced intestinal in vitro models has received increasing attention in recent years. While the availability of relevant in vitro models is pivotal to advance the replacement and reduction of animal use in research, their robustness is a crucial determinant for intra- and interlaboratory reproducibility. We have developed a standard protocol to build a triple culture model combining two type...
Global maps of soil temperatureNARA Subscribed
Research in global change ecology relies heavily on global climatic grids derived from estimates of air temperature in open areas at around 2 m above the ground. These climatic grids do not reflect conditions below vegetation canopies and near the ground surface, where critical ecosystem functions occur and most terrestrial species reside. Here, we provide global maps of soil temperature and bioclimatic variables at a 1‐km 2 r...
Functional traits offer a rich quantitative framework for developing and testing theories in evolutionary biology, ecology and ecosystem science. However, the potential of functional traits to drive theoretical advances and refine models of global change can only be fully realised when species‐level information is complete. Here we present the AVONET dataset containing comprehensive functional trait data for all birds, includi...
Statistical upscaling of ecosystem CO 2 fluxes across the terrestrial tundra and boreal domain: Regional patterns and uncertaintiesNARA Subscribed
The regional variability in tundra and boreal carbon dioxide (CO 2 ) fluxes can be high, complicating efforts to quantify sink‐source patterns across the entire region. Statistical models are increasingly used to predict (i.e., upscale) CO 2 fluxes across large spatial domains, but the reliability of different modeling techniques, each with different specifications and assumptions, has not been assessed in detail. Here, we com...
Are visual working memory and episodic memory distinct processes? Insight from stroke patients by lesion-symptom mappingNARA Subscribed
Working memory and episodic memory are two different processes, although the nature of their interrelationship is debated. As these processes are predominantly studied in isolation, it is unclear whether they crucially rely on different neural substrates. To obtain more insight in this, 81 adults with sub-acute ischemic stroke and 29 elderly controls were assessed on a visual working memory task, followed by a surprise subsequ...
The oceans’ uptake of anthropogenic carbon dioxide (CO 2 ) decreases seawater pH and alters the inorganic carbon speciation – summarized in the term ocean acidification (OA). Already today, coastal regions experience episodic pH events during which surface layer pH drops below values projected for the surface ocean at the end of the century. Future OA is expected to further enhance the intensity of these coastal extreme pH eve...
Mammalian carnivores are considered a key group in maintaining ecological health and can indicate potential ecological integrity in landscapes where they occur. Carnivores also hold high conservation value and their habitat requirements can guide management and conservation plans. The order Carnivora has 84 species from 8 families in the Neotropical region: Canidae; Felidae; Mephitidae; Mustelidae; Otariidae; Phocidae; Procyon...
Biodiversity loss is a hallmark of our times, but predicting its consequences is challenging. Ecological interactions form complex networks with multiple direct and indirect paths through which the impacts of an extinction may propagate. Here we show that accounting for these multiple paths connecting species is necessary to predict how extinctions affect the integrity of ecological networks. Using an approach initially develo...