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Interpretable deep learning reveals spatiotemporal MRI features of brain aging that align with neurodegenerationNARA Subscribed
Cortical thinning and atrophy are hallmarks of brain aging that have been characterized using magnetic resonance imaging (MRI). Brain aging involves many neuroanatomic features whose effects on brain structure remain unexplored. To address this challenge, we trained interpretable deep neural networks (DNNs) to estimate brain age (BA) from T 1 -weighted ( T 1 w) MRI. By identifying MRI features unapparent to humans, DNNs can fi...
Alzheimer’s disease (AD) disproportionately affects women and carriers of the apolipoprotein E ε4 allele (APOE4), yet little is known about how sex and APOE interact to influence white matter (WM) integrity during disease progression. We integrated diffusion MRI and matched blood transcriptomic data to investigate these interactions and their underlying biological mechanisms. WM microstructure was quantified using diffusion te...
Two Contrasting Demographic Processes Shape the Divergence and Evolution of the Widespread Arid Zone Specialist, Petrogale lateralisNARA Subscribed
Organisms living in arid environments are predicted to be at increased risk of extinction under climatic and anthropogenic change. Response to past climate change can provide some insights into these risks; however, our understanding of the diversification and evolutionary history of many arid‐adapted species is still limited, particularly in Australia. Here, we evaluate the demographic and evolutionary history of a widespread...
Aotearoa New Zealand’s marine carbon cycle in a changing climate – Current understanding and future directionsNARA Subscribed
The marine system plays a critical role in the global climate cycle, as a major control of atmospheric carbon dioxide (CO 2 ). Marine primary production (photosynthesis) and remineralisation of organic carbon (respiration, degradation) determine the amount of CO 2 sequestered in marine sediments and deep‐water environments on century to millennial timescales. The stocks and fluxes of the marine carbon cycle are susceptible to...
Genetic mixing in conservation translocations increases diversity of a keystone threatened species, Bettongia lesueurNARA Subscribed
Translocation programmes are increasingly being informed by genetic data to monitor and enhance conservation outcomes for both natural and established populations. These data provide a window into contemporary patterns of genetic diversity, structure and relatedness that can guide managers in how to best source animals for their translocation programmes. The inclusion of historical samples, where possible, strengthens monitori...
Motivation Here, we make available a second version of the BioTIME database, which compiles records of abundance estimates for species in sample events of ecological assemblages through time. The updated version expands version 1.0 of the database by doubling the number of studies and includes substantial additional curation to the taxonomic accuracy of the records, as well as the metadata. Moreover, we now provide an R packag...
Predicting the progression of MCI and Alzheimer’s disease on structural brain integrity and other features with machine learningNARA Subscribed
Machine learning (ML) on structural MRI data shows high potential for classifying Alzheimer’s disease (AD) progression, but the specific contribution of brain regions, demographics, and proteinopathy remains unclear. Using Alzheimer’s Disease Neuroimaging Initiative (ADNI) data, we applied an extreme gradient-boosting algorithm and SHAP (SHapley Additive exPlanations) values to classify cognitively normal (CN) older adults, th...
Remotely Sensed Fire Heterogeneity and Biomass Recovery Predicts Empirical Biodiversity ResponsesNARA Subscribed
Aim To compare field‐based evidence of plant and animal responses to fire with remotely sensed signals of fire heterogeneity and post‐fire biomass recovery. Location South‐eastern Australia; New South Wales. Time Period 2019–2022. Major Taxa Studied A total of 982 species of plants and animals, in eight taxonomic groups: amphibians, birds, fish, insects, mammals, molluscs, plants and reptiles. Methods We collated 545,223 plant...
Sea turtles are a taxon of conservation concern and are highly migratory, exposing them to a variety of threats (e.g., fisheries bycatch, direct harvest) across their lifetime. Understanding the abundance of nesting females, hatchling production, and migratory movements - three of the most basic biological data needs for this species group - is imperative for population assessment. This study summarizes novel data most relevan...
Microplastics are ubiquitous in marine environments and have been documented across all ocean compartments, especially surface waters, across the world. Even though several studies identify the presence of microplastics in the world’s five oceans, there remains an overt problem of large inconsistencies in their sampling, extraction, and consequent quantification. Despite the complexity of these methodologies, researchers have...
Population genomics of a predatory mammal reveals patterns of decline and impacts of exposure to toxic toadsNARA Subscribed
Mammal declines across northern Australia are one of the major biodiversity loss events occurring globally. There has been no regional assessment of the implications of these species declines for genomic diversity. To address this, we conducted a species‐wide assessment of genomic diversity in the northern quoll ( Dasyurus hallucatus ), an Endangered marsupial carnivore. We used next generation sequencing methods to genotype 1...
There is a scarcity of long-term groundwater hydrographs from sub-Saharan Africa to investigate groundwater sustainability, processes and controls. This paper presents an analysis of 21 hydrographs from semi-arid South Africa. Hydrographs from 1980 to 2000 were converted to standardised groundwater level indices and rationalised into four types (C1–C4) using hierarchical cluster analysis. Mean hydrographs for each type were cr...
Predicting biodiversity richness in rapidly changing landscapes: climate, low human pressure or protection as salvation?NARA Subscribed
Rates of biodiversity loss in Southeast Asia are among the highest in the world, and the Indo-Burma and South-Central China Biodiversity Hotspots rank among the world’s most threatened. Developing robust multi-species conservation models is critical for stemming biodiversity loss both here and globally. We used a large and geographically extensive remote-camera survey and multi-scale, multivariate optimization species distribu...
COSORE: A community database for continuous soil respiration and other soil‐atmosphere greenhouse gas flux dataNARA Subscribed
Globally, soils store two to three times as much carbon as currently resides in the atmosphere, and it is critical to understand how soil greenhouse gas (GHG) emissions and uptake will respond to ongoing climate change. In particular, the soil‐to‐atmosphere CO 2 flux, commonly though imprecisely termed soil respiration ( R S ), is one of the largest carbon fluxes in the Earth system. An increasing number of high‐frequency R S...