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Interpretable deep learning reveals spatiotemporal MRI features of brain aging that align with neurodegenerationNARA Subscribed
Cortical thinning and atrophy are hallmarks of brain aging that have been characterized using magnetic resonance imaging (MRI). Brain aging involves many neuroanatomic features whose effects on brain structure remain unexplored. To address this challenge, we trained interpretable deep neural networks (DNNs) to estimate brain age (BA) from T 1 -weighted ( T 1 w) MRI. By identifying MRI features unapparent to humans, DNNs can fi...
Alzheimer’s disease (AD) disproportionately affects women and carriers of the apolipoprotein E ε4 allele (APOE4), yet little is known about how sex and APOE interact to influence white matter (WM) integrity during disease progression. We integrated diffusion MRI and matched blood transcriptomic data to investigate these interactions and their underlying biological mechanisms. WM microstructure was quantified using diffusion te...
Predicting the progression of MCI and Alzheimer’s disease on structural brain integrity and other features with machine learningNARA Subscribed
Machine learning (ML) on structural MRI data shows high potential for classifying Alzheimer’s disease (AD) progression, but the specific contribution of brain regions, demographics, and proteinopathy remains unclear. Using Alzheimer’s Disease Neuroimaging Initiative (ADNI) data, we applied an extreme gradient-boosting algorithm and SHAP (SHapley Additive exPlanations) values to classify cognitively normal (CN) older adults, th...
Dominance and rarity in tree communities across the globe: Patterns, predictors and threatsNARA Subscribed
Aim Ecological and anthropogenic factors shift the abundances of dominant and rare tree species within local forest communities, thus affecting species composition and ecosystem functioning. To inform forest and conservation management it is important to understand the drivers of dominance and rarity in local tree communities. We answer the following research questions: (1) What are the patterns of dominance and rarity in tree...
Translocations maintain genetic diversity and increase connectivity in sea otters, Enhydra lutrisNARA Subscribed
Sea otters, Enhydra lutris , were once abundant along the nearshore areas of the North Pacific. The international maritime fur trade that ended in 1911 left 13 small remnant populations with low genetic diversity. Subsequent translocations into previously occupied habitat resulted in several reintroduced populations along the coast of North America. We sampled sea otters between 2008 and 2011 throughout much of their current r...
Annual precipitation explains variability in dryland vegetation greenness globally but not locallyNARA Subscribed
Dryland vegetation productivity is strongly modulated by water availability. As precipitation patterns and variability are altered by climate change, there is a pressing need to better understand vegetation responses to precipitation variability in these ecologically fragile regions. Here we present a global analysis of dryland sensitivity to annual precipitation variations using long‐term records of normalized difference vege...
Identifying areas at risk of drought‐induced tree mortality across South‐Eastern AustraliaNARA Subscribed
South‐East Australia has recently been subjected to two of the worst droughts in the historical record (Millennium Drought, 2000–2009 and Big Dry, 2017–2019). Unfortunately, a lack of forest monitoring has made it difficult to determine whether widespread tree mortality has resulted from these droughts. Anecdotal observations suggest the Big Dry may have led to more significant tree mortality than the Millennium drought. Criti...
Phylogeography of the widespread creek chub Semotilus atromaculatus (Cypriniformes: Leuciscidae)NARA Subscribed
The extent and nature of genetic differentiation in Semotilus atromaculatus , one of the most abundant and widespread leuciscids in North America, were evaluated based on mitochondrial (mt) and nuclear DNA sequence variation. Phylogenetic relationships were first inferred based on a fragment of the cytochrome b ( cytb ) region and the nuclear intron s7 gene for S. atromaculatus and all other congeners as well as representative...
Aim Large tropical trees form the interface between ground and airborne observations, offering a unique opportunity to capture forest properties remotely and to investigate their variations on broad scales. However, despite rapid development of metrics to characterize the forest canopy from remotely sensed data, a gap remains between aerial and field inventories. To close this gap, we propose a new pan‐tropical model to predic...
Stream flow alone does not predict population structure of diving beetles across complex tropical landscapesNARA Subscribed
Recent theoretical advances have hypothesized a central role of habitat persistence on population genetic structure and resulting biodiversity patterns of freshwater organisms. Here, we address the hypothesis that lotic species, or lineages adapted to comparably geologically stable running water habitats (streams and their marginal habitats), have high levels of endemicity and phylogeographic structure due to the persistent na...
Phylogeography and population genomics of a lotic water beetle across a complex tropical landscapeNARA Subscribed
The habitat template concept applied to a freshwater system indicates that lotic species, or those which occupy permanent habitats along stream courses, are less dispersive than lentic species, or those that occur in more ephemeral aquatic habitats. Thus, populations of lotic species will be more structured than those of lentic species. Stream courses include both flowing water and small, stagnant microhabitats that can provid...
Aim We examine spatial and temporal patterns of diversification among flightless weevils in the genus Rhyncogonus (Curculionidae: Entiminae), with respect to their passive mode of dispersal by rafting or upon birds and the geological context of Pacific island archipelagos. Location Archipelagos and islands of the Pacific Ocean, especially the South Pacific and Hawaii. Methods Nuclear and mitochondrial DNA sequence data were us...
Climate‐related trends in Australian vegetation cover as inferred from satellite observations, 1981–2006NARA Subscribed
Using Advanced Very High Resolution Radiometer data spanning 1981–2006 and calibrated for long‐term analyses of vegetation dynamics, we examine whether vegetation cover has increased across Australia and whether there has been a differential response of vegetation functional types in response to changes in climatic growing conditions. Trends in vegetation cover are interpreted within Budyko's energy – water limitation framewor...
We present a novel approach to estimating the transpiration flux and gross primary productivity (GPP) from Normalized Difference Vegetation Index, leaf functional types, and readily available climate data. We use this approach to explore the impact of variations in the concentration of carbon dioxide in the atmosphere ([CO 2 ]) and consequent predicted changes in vegetation cover, on the transpiration flux and GPP. There was a...
Changes in Australian pan evaporation from 1970 to 2002NARA Subscribed
Contrary to expectations, measurements of pan evaporation show decreases in many parts of the Northern Hemisphere over the last 50 years. When combined with rainfall measurements, these data show that much of the Northern Hemisphere's terrestrial surface has become less arid over the last 50 years. However, whether the decrease in pan evaporation is a phenomenon limited to the Northern Hemisphere has until now been unknown bec...
Soil carbon stocks and bulk density: spatial or cumulative mass coordinates as a basis of expression?NARA Subscribed
Accounting for CO 2 fluxes by determining changes in stocks of soil carbon (C) as a result of land use change is an option for complying nations under the Kyoto Protocol. The 1996 IPCC guidelines for C accounting recommend that soil C stocks to a depth of 30 cm be used in such accounting. However, the soil bulk density often changes with land use and the soil C per unit ground area to a fixed depth will also change even withou...
Estimating mixtures of leaf functional types using continental‐scale satellite and climatic dataNARA Subscribed
Aim Recent research has shown that much of the variability in leaf gas exchange and leaf longevity can be related to variations in the surface : volume ratio of leaves. The aim of this paper was to develop a theoretical framework and a practical method to extend that result to the vegetation at the continental scale. Location The study was conducted in Australia. Methods We propose that vegetation is composed of a mixture of t...
Estimating woody and herbaceous vegetation cover from time series satellite observationsNARA Subscribed
Summary In this paper we test a method to estimate the tree and grass vegetation cover over Australia from satellite‐derived normalized difference vegetation index (NDVI) time series (monthly 1981–91, ≈5 km pixels) observations. The evergreen cover is assumed to track along the base of the NDVI time series, which is assumed to be equivalent to the woody vegetation cover. The base of the NDVI time series is estimated using modi...
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