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Melanized Focal Changes in the Fillets of Farmed Atlantic Salmon: A Clinical Report From a Deep‐Sea Production SiteNARA Subscribed
Melanized focal changes (MFCs) are a persistent challenge in Atlantic salmon ( Salmo salar ) aquaculture, affecting product quality and fish welfare. These lesions are generally considered to arise from red focal changes (RFCs), which are often attributed to handling‐related trauma, but underlying mechanisms remain poorly understood. In this case report, we investigated the occurrence and histopathological features of RFCs and...
Accumulation of plastic litter in the marine environment is a pressing global concern. To study this issue, we use the Blue2 Modelling Framework (Blue2MF), an integrated modelling tool developed by the Joint Research Centre (JRC) of the European Commission. Our study uses the Lagrangian model LTRANS-Zlev (LTRANS) in the Blue2MF to simulate the trajectories, distribution, and accumulation of macroplastics in five European marin...
Aim The urgency for remote, reliable and scalable biodiversity monitoring amidst mounting human pressures on ecosystems has sparked worldwide interest in Passive Acoustic Monitoring (PAM), which can track life underwater and on land. However, we lack a unified methodology to report this sampling effort and a comprehensive overview of PAM coverage to gauge its potential as a global research and monitoring tool. To address this...
Denitrification in Agricultural Soils – Integrated control and Modelling at various scales (DASIM)NARA Subscribed
The special issue summarises and highlights key findings of the research unit DASIM funded by the German Research Foundation (DFG) on the process of denitrification. Progress was made in several areas including the development of new and advanced methods to quantify N 2 fluxes such as a new 15 N gas flux method, enhanced Raman spectroscopy and a new incubation system to study plant-soil interactions in He-O 2 atmosphere. Under...
Denitrification is an important component of the nitrogen cycle in soil, returning reactive nitrogen to the atmosphere. Denitrification activity is often concentrated spatially in anoxic microsites and temporally in ephemeral events, which presents a challenge for modelling. The anaerobic fraction of soil volume can be a useful predictor of denitrification in soils. Here, we provide a review of this soil characteristic, its co...
Dominance and rarity in tree communities across the globe: Patterns, predictors and threatsNARA Subscribed
Aim Ecological and anthropogenic factors shift the abundances of dominant and rare tree species within local forest communities, thus affecting species composition and ecosystem functioning. To inform forest and conservation management it is important to understand the drivers of dominance and rarity in local tree communities. We answer the following research questions: (1) What are the patterns of dominance and rarity in tree...
Testing food web theory in a large lake: The role of body size in habitat coupling in Lake MichiganNARA Subscribed
The landscape theory of food web architecture (LTFWA) describes relationships among body size, trophic position, mobility, and energy channels that serve to couple heterogenous habitats, which in turn promotes long‐term system stability. However, empirical tests of the LTFWA are rare and support differs among terrestrial, freshwater, and marine systems. Further, it is unclear whether the theory applies in highly altered ecosys...
Geography and ecology shape the phylogenetic composition of Amazonian tree communitiesNARA Subscribed
Aim Amazonia hosts more tree species from numerous evolutionary lineages, both young and ancient, than any other biogeographic region. Previous studies have shown that tree lineages colonized multiple edaphic environments and dispersed widely across Amazonia, leading to a hypothesis, which we test, that lineages should not be strongly associated with either geographic regions or edaphic forest types. Location Amazonia. Taxon A...
Cetaceans are known for their intelligence and display of complex behaviours including object use. For example, bowhead whales (Balaena mysticetus) are known to rub on rocks and some humpback whale (Megaptera novaeangliae) populations undertake lateral bottom feeding. Such underwater behaviour is difficult to observe but can play a critical role in the whales’ survival and well-being. Distinguishing social behaviours from thos...
Geographic patterns of tree dispersal modes in Amazonia and their ecological correlatesNARA Subscribed
Aim To investigate the geographic patterns and ecological correlates in the geographic distribution of the most common tree dispersal modes in Amazonia (endozoochory, synzoochory, anemochory and hydrochory). We examined if the proportional abundance of these dispersal modes could be explained by the availability of dispersal agents (disperser‐availability hypothesis) and/or the availability of resources for constructing zoocho...
Aim Water availability is the major driver of tropical forest structure and dynamics. Most research has focused on the impacts of climatic water availability, whereas remarkably little is known about the influence of water table depth and excess soil water on forest processes. Nevertheless, given that plants take up water from the soil, the impacts of climatic water supply on plants are likely to be modulated by soil water con...
Common, low-frequency, rare, and ultra-rare coding variants contribute to COVID-19 severityNARA Subscribed
The combined impact of common and rare exonic variants in COVID-19 host genetics is currently insufficiently understood. Here, common and rare variants from whole-exome sequencing data of about 4000 SARS-CoV-2-positive individuals were used to define an interpretable machine-learning model for predicting COVID-19 severity. First, variants were converted into separate sets of Boolean features, depending on the absence or the pr...
Making Ambient Noise Trends Accessible (MANTA) software is a tool for the community to enable comparisons between soundscapes and identification of ambient ocean sound trends required by ocean stakeholders. MANTA enhances the value of individual datasets by assisting users in creating thorough calibration metadata and internationally recommended products comparable over time and space to ultimately assess ocean sound at any de...
Variations in mucous cell numbers in gills of Atlantic salmon ( Salmo salar ) presmolt in commercial freshwater farms in NorwayNARA Subscribed
Fish gills are heavily exposed to the external milieu and may react against irritants with different cellular responses. We describe variations in mucous cell counts in gills from healthy Atlantic salmon ( Salmo salar ) presmolts in five recirculating aquaculture system (RAS) farms and one flow‐through farm. Based on certain criteria, mucous cells were histologically quantified in a defined lamellar region of the gills and the...
Managing the impacts of invasive alien species (IAS) is a great societal challenge. A wide variety of terms have been used to describe the management of invasive alien species and the sequence in which they might be applied. This variety and lack of consistency creates uncertainty in the presentation and description of management in policy, science and practice. Here we expand on the existing description of the invasion proces...
Competition influences tree growth, but not mortality, across environmental gradients in Amazonia and tropical AfricaNARA Subscribed
Competition among trees is an important driver of community structure and dynamics in tropical forests. Neighboring trees may impact an individual tree’s growth rate and probability of mortality, but large‐scale geographic and environmental variation in these competitive effects has yet to be evaluated across the tropical forest biome. We quantified effects of competition on tree‐level basal area growth and mortality for trees...
Invasion syndromes: a systematic approach for predicting biological invasions and facilitating effective managementNARA Subscribed
Our ability to predict invasions has been hindered by the seemingly idiosyncratic context-dependency of individual invasions. However, we argue that robust and useful generalisations in invasion science can be made by considering “invasion syndromes” which we define as “a combination of pathways, alien species traits, and characteristics of the recipient ecosystem which collectively result in predictable dynamics and impacts,...