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Ensuring reproducibility in scientific research is crucial for validating findings, advancing knowledge, and fostering trust within the scientific community. Containerization of code is a widespread practice to help ensure reproducibility in neuroimaging research. However, there exists no universal method of sharing containers, nor is it feasible to broadly enforce rules due to the diversity of research practices. We posit tha...
The sacred kingfisher Todiramphus sanctus is a widespread bird species that is non-migratory in New Zealand, in contrast to elsewhere in the world. We describe a new species of Skrjabinoclava , a genus of acuariid nematodes, recovered from the oropharynx of sacred kingfishers in New Zealand. This is the first record of Skrjabinoclava in Australasia and the first publicly available DNA sequence for the genus. Skrjabinoclava pha...
Interpretable deep learning reveals spatiotemporal MRI features of brain aging that align with neurodegenerationNARA Subscribed
Cortical thinning and atrophy are hallmarks of brain aging that have been characterized using magnetic resonance imaging (MRI). Brain aging involves many neuroanatomic features whose effects on brain structure remain unexplored. To address this challenge, we trained interpretable deep neural networks (DNNs) to estimate brain age (BA) from T 1 -weighted ( T 1 w) MRI. By identifying MRI features unapparent to humans, DNNs can fi...
Evaluating past and future contributions of conservation programs to species recoveryNARA Subscribed
Impact evaluation of conservation actions is a crucial step in global efforts to curb the biodiversity crisis. Through robust impact evaluation, practitioners can assess the effectiveness of conservation strategies and optimize the use of limited resources. Despite a proliferation of methods and tools for evaluating conservation impact, no standardized method exists to assess and compare the impact, and global contribution, of...
Alzheimer’s disease (AD) disproportionately affects women and carriers of the apolipoprotein E ε4 allele (APOE4), yet little is known about how sex and APOE interact to influence white matter (WM) integrity during disease progression. We integrated diffusion MRI and matched blood transcriptomic data to investigate these interactions and their underlying biological mechanisms. WM microstructure was quantified using diffusion te...
Bomb radiocarbon reveals keratin growth dynamics in loggerhead (Caretta caretta) and green (Chelonia mydas) turtlesNARA Subscribed
Incrementally formed biological tissues can serve as archives of biochemical information pertaining to the life histories of organisms. The sequential isotopic analysis of marine turtle scute keratin is increasingly used for ecological reconstruction, but the timescales represented by these tissues remain poorly understood. Here, we present a method to establish scute growth rates using sequential radiocarbon ( 14 C) measureme...
Epistatic effects of IGHG and FCGRIIB genes on the development of Alzheimer’s disease in African AmericansNARA Subscribed
Genome-wide association studies (GWAS) of Alzheimer’s disease (AD) have identified a large number of susceptibility genes, but most of AD heritability remains unexplained, implying the existence of additional genes. Furthermore, the majority of the GWAS have been conducted in people of European descent, and the genes important for AD susceptibility in people of African descent have been underexplored. In this hypothesis-genera...
With an area covering just under 1 million km 2 , Australia’s Coral Sea Marine Park (CSMP) is among the largest marine protected areas globally. Yet, the demersal deep-reef fish fauna of the CSMP remains poorly described, due in part to its remote location, as well as its sheer size, much of which is inaccessible below conventional SCUBA diving depths. Recent remotely operated vehicle (ROV) explorations conducted by the Schmid...